Commit 46e6e00b authored 5 years ago by Dominik Burri

replaced synthetic test by new one.

moved input_files into top-layer test directory for consistency.

corrected removal of test files

parent ad3a8e52

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.gitignore 1 addition, 0 deletions

.gitignore
images/dag_test_workflow.svg 34 additions, 34 deletions

images/dag_test_workflow.svg
images/rule_graph.svg 53 additions, 53 deletions

images/rule_graph.svg
tests/input_files/config_alfa.yaml 9 additions, 0 deletions

tests/input_files/config_alfa.yaml
tests/input_files/homo_sapiens/quick_start.gtf 6 additions, 0 deletions

tests/input_files/homo_sapiens/quick_start.gtf
tests/input_files/samples_alfa.tsv 5 additions, 0 deletions

tests/input_files/samples_alfa.tsv
tests/test_alfa/expected_output.md5 30 additions, 16 deletions

tests/test_alfa/expected_output.md5
tests/test_alfa/results/paired_end/paired_end_R1_on_minus_antisense/map_genome/paired_end_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions

...d_end_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam
tests/test_alfa/results/paired_end/paired_end_R1_on_minus_antisense/map_genome/paired_end_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions

...d_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam.bai
tests/test_alfa/results/paired_end/paired_end_R1_on_minus_sense/map_genome/paired_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions

...aired_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam
tests/test_alfa/results/paired_end/paired_end_R1_on_minus_sense/map_genome/paired_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions

...d_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam.bai
tests/test_alfa/results/paired_end/paired_end_R1_on_plus_antisense/map_genome/paired_end_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions

...ed_end_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam
tests/test_alfa/results/paired_end/paired_end_R1_on_plus_antisense/map_genome/paired_end_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions

...nd_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam.bai
tests/test_alfa/results/paired_end/paired_end_R1_on_plus_sense/map_genome/paired_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions

...paired_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam
tests/test_alfa/results/paired_end/paired_end_R1_on_plus_sense/map_genome/paired_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions

...ed_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam.bai
tests/test_alfa/results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/map_genome/synthetic_10_reads_paired_synthetic_10_reads_paired_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions

...d_synthetic_10_reads_paired_Aligned.sortedByCoord.out.bam
tests/test_alfa/results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/map_genome/synthetic_10_reads_paired_synthetic_10_reads_paired_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions

...nthetic_10_reads_paired_Aligned.sortedByCoord.out.bam.bai
tests/test_alfa/results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/map_genome/synthetic_10_reads_paired_synthetic_10_reads_paired_Log.final.out 0 additions, 37 deletions

...c_10_reads_paired_synthetic_10_reads_paired_Log.final.out
tests/test_alfa/results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/map_genome/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1_Aligned.sortedByCoord.out.bam 0 additions, 0 deletions

...1_synthetic_10_reads_mate_1_Aligned.sortedByCoord.out.bam
tests/test_alfa/results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/map_genome/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1_Aligned.sortedByCoord.out.bam.bai 0 additions, 0 deletions

...nthetic_10_reads_mate_1_Aligned.sortedByCoord.out.bam.bai

with 138 additions and 140 deletions

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