update test input files
- replace corrupt input files - add script that runs locally named `run_test.sh` in the snakemake directory - add script to CI/CD pipeline - fix typo in `paired_end.snakefile` - update samples.tsv with fake adapter `XXXXXXX` when we do not want to trim them
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- .gitignore 3 additions, 0 deletions.gitignore
- .gitlab-ci.yml 1 addition, 0 deletions.gitlab-ci.yml
- snakemake/Snakefile 4 additions, 1 deletionsnakemake/Snakefile
- snakemake/paired_end.snakefile 2 additions, 19 deletionssnakemake/paired_end.snakefile
- snakemake/run_test.sh 11 additions, 0 deletionssnakemake/run_test.sh
- snakemake/single_end.snakefile 0 additions, 17 deletionssnakemake/single_end.snakefile
- tests/input_files/GSM1502498_1.fastq.gz 0 additions, 0 deletionstests/input_files/GSM1502498_1.fastq.gz
- tests/input_files/GSM1502498_2.fastq.gz 0 additions, 0 deletionstests/input_files/GSM1502498_2.fastq.gz
- tests/input_files/GSM1502500_1.fastq.gz 0 additions, 0 deletionstests/input_files/GSM1502500_1.fastq.gz
- tests/input_files/GSM1502500_2.fastq.gz 0 additions, 0 deletionstests/input_files/GSM1502500_2.fastq.gz
- tests/input_files/Homo_sapiens.GRCh38.99.chr.chrom_22.gtf 62504 additions, 0 deletionstests/input_files/Homo_sapiens.GRCh38.99.chr.chrom_22.gtf
- tests/input_files/Homo_sapiens.GRCh38.dna_sm.primary_assembly.chrom_22.fa 846976 additions, 0 deletions...s/Homo_sapiens.GRCh38.dna_sm.primary_assembly.chrom_22.fa
- tests/input_files/transcripts_chrom_22.fa 120613 additions, 0 deletionstests/input_files/transcripts_chrom_22.fa
- tests/samples.tsv 3 additions, 3 deletionstests/samples.tsv
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