Remove extra parameters, that had or should have the default values
and are therefore not required in the rules. - Snakefile star_rpm: --outWigNorm (default RPM was used) star_rpm: --outWigStrand (default Stranded was used) rename_star_rpm_for_alfa: orientation in params is redundant (Fixes #152) - single_end.snakefile.smk map_genome_star: outFilterMismatchNoverLmax map_genome_star: outFilterScoreMinOverLread map_genome_star: outFilterMatchNminOverLread quantification_salmon: --writeUnmappedNames - paired_end.snakefile.smk pe_map_genome_star: outFilterMismatchNoverLmax pe_map_genome_star: outFilterScoreMinOverLread pe_map_genome_star: outFilterMatchNminOverLread quantification_salmon: --writeUnmappedNames
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- Snakefile 2 additions, 24 deletionsSnakefile
- pipeline_documentation.md 24 additions, 33 deletionspipeline_documentation.md
- workflow/rules/paired_end.snakefile.smk 0 additions, 11 deletionsworkflow/rules/paired_end.snakefile.smk
- workflow/rules/single_end.snakefile.smk 0 additions, 10 deletionsworkflow/rules/single_end.snakefile.smk
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