Merge branch 'feature/conda-support' into 'dev'
Conda support in ZARP See merge request !89
Showing
- .gitlab-ci.yml 2 additions, 1 deletion.gitlab-ci.yml
- README.md 19 additions, 10 deletionsREADME.md
- tests/test_create_dag_image/test.sh 1 addition, 1 deletiontests/test_create_dag_image/test.sh
- tests/test_create_rule_graph/test.sh 1 addition, 1 deletiontests/test_create_rule_graph/test.sh
- tests/test_integration_workflow/test.local.sh 2 additions, 2 deletionstests/test_integration_workflow/test.local.sh
- tests/test_integration_workflow_multiple_lanes/test.local.sh 2 additions, 2 deletionstests/test_integration_workflow_multiple_lanes/test.local.sh
- tests/test_integration_workflow_with_conda/expected_output.files 114 additions, 0 deletions...est_integration_workflow_with_conda/expected_output.files
- tests/test_integration_workflow_with_conda/expected_output.md5 96 additions, 0 deletions.../test_integration_workflow_with_conda/expected_output.md5
- tests/test_integration_workflow_with_conda/test.local.sh 91 additions, 0 deletionstests/test_integration_workflow_with_conda/test.local.sh
- tests/test_integration_workflow_with_conda/test.slurm.sh 94 additions, 0 deletionstests/test_integration_workflow_with_conda/test.slurm.sh
- tests/test_scripts_prepare_inputs_table/test.sh 1 addition, 1 deletiontests/test_scripts_prepare_inputs_table/test.sh
- workflow/Snakefile 62 additions, 3 deletionsworkflow/Snakefile
- workflow/envs/STAR.yaml 7 additions, 0 deletionsworkflow/envs/STAR.yaml
- workflow/envs/alfa.yaml 7 additions, 0 deletionsworkflow/envs/alfa.yaml
- workflow/envs/bedtools.yaml 7 additions, 0 deletionsworkflow/envs/bedtools.yaml
- workflow/envs/cutadapt.yaml 7 additions, 0 deletionsworkflow/envs/cutadapt.yaml
- workflow/envs/fastqc.yaml 7 additions, 0 deletionsworkflow/envs/fastqc.yaml
- workflow/envs/gffread.yaml 7 additions, 0 deletionsworkflow/envs/gffread.yaml
- workflow/envs/kallisto.yaml 7 additions, 0 deletionsworkflow/envs/kallisto.yaml
- workflow/envs/r-merge-kallisto.yaml 7 additions, 0 deletionsworkflow/envs/r-merge-kallisto.yaml
Loading
Please register or sign in to comment