clean up tests
- set up integration test for Snakefile in dedicated folder; current test case was left untouched for the time being, despite requiring large input files - set up DAG chart creation test in dedicated folder; script creates an SVG representation of the workflow DAG at `images/workflow_dag.svg` - both tests have been added to the GitLab CI/CD configuration; the latter test ensures that always the latest version of the - all tests are now located inside subdirectories of `tests/`; test scripts and configuration files for test runs etc. have been moved to the appropriate test directories - for the time being, required input files for each test are placed within the individual test directories; a layout for common test files should be introduced later and paths and bind paths in tests adapted - make script `scripts/labkey_api.py` executable
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- .gitlab-ci.yml 6 additions, 5 deletions.gitlab-ci.yml
- images/workflow_dag.svg 95 additions, 0 deletionsimages/workflow_dag.svg
- scripts/labkey_api.py 0 additions, 0 deletionsscripts/labkey_api.py
- snakemake/create_snakemake_flowchart.sh 0 additions, 1 deletionsnakemake/create_snakemake_flowchart.sh
- snakemake/run_snakefile.sh 0 additions, 13 deletionssnakemake/run_snakefile.sh
- snakemake/run_test.sh 0 additions, 11 deletionssnakemake/run_test.sh
- tests/samples.tsv 0 additions, 3 deletionstests/samples.tsv
- tests/test_create_dag_chart/.snakemake/log/2020-02-04T153123.241756.snakemake.log 9 additions, 0 deletions...art/.snakemake/log/2020-02-04T153123.241756.snakemake.log
- tests/test_create_dag_chart/.snakemake/log/2020-02-04T153204.024195.snakemake.log 5 additions, 0 deletions...art/.snakemake/log/2020-02-04T153204.024195.snakemake.log
- tests/test_create_dag_chart/.snakemake/log/2020-02-04T153253.153466.snakemake.log 5 additions, 0 deletions...art/.snakemake/log/2020-02-04T153253.153466.snakemake.log
- tests/test_create_dag_chart/.snakemake/log/2020-02-04T153305.441930.snakemake.log 1 addition, 0 deletions...art/.snakemake/log/2020-02-04T153305.441930.snakemake.log
- tests/test_create_dag_chart/.snakemake/log/2020-02-04T153343.033762.snakemake.log 1 addition, 0 deletions...art/.snakemake/log/2020-02-04T153343.033762.snakemake.log
- tests/test_create_dag_chart/.snakemake/log/2020-02-04T153536.300877.snakemake.log 1 addition, 0 deletions...art/.snakemake/log/2020-02-04T153536.300877.snakemake.log
- tests/test_create_dag_chart/.snakemake/log/2020-02-04T154438.496145.snakemake.log 1 addition, 0 deletions...art/.snakemake/log/2020-02-04T154438.496145.snakemake.log
- tests/test_create_dag_chart/config.yaml 2 additions, 2 deletionstests/test_create_dag_chart/config.yaml
- tests/test_create_dag_chart/input_files/GSM1502498_1.fastq.gz 0 additions, 0 deletions...s/test_create_dag_chart/input_files/GSM1502498_1.fastq.gz
- tests/test_create_dag_chart/input_files/GSM1502498_2.fastq.gz 0 additions, 0 deletions...s/test_create_dag_chart/input_files/GSM1502498_2.fastq.gz
- tests/test_create_dag_chart/input_files/GSM1502500_1.fastq.gz 0 additions, 0 deletions...s/test_create_dag_chart/input_files/GSM1502500_1.fastq.gz
- tests/test_create_dag_chart/input_files/GSM1502500_2.fastq.gz 0 additions, 0 deletions...s/test_create_dag_chart/input_files/GSM1502500_2.fastq.gz
- tests/test_create_dag_chart/input_files/samples.tsv 3 additions, 0 deletionstests/test_create_dag_chart/input_files/samples.tsv
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