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Commit 6f0edfc9 authored by BIOPZ-Katsantoni Maria's avatar BIOPZ-Katsantoni Maria
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Api test md5 incosistency fix

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1 merge request!31Handle polyA processing in input preparation script
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<text text-anchor="middle" x="146" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<text text-anchor="middle" x="462" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
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<!-- 3&#45;&gt;0 -->
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<g id="node5" class="node"><title>4</title>
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<!-- 4&#45;&gt;0 -->
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<!-- 5 -->
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<!-- 5&#45;&gt;0 -->
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<!-- 6 -->
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<!-- 6&#45;&gt;0 -->
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<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge"><title>7&#45;&gt;0</title>
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<!-- 8 -->
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<text text-anchor="middle" x="1065" y="-82" font-family="sans" font-size="10.00">seqmode: single_end</text>
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<!-- 8&#45;&gt;0 -->
<g id="edge8" class="edge"><title>8&#45;&gt;0</title>
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<!-- 9 -->
<g id="node10" class="node"><title>9</title>
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<text text-anchor="middle" x="670" y="-306" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge"><title>9&#45;&gt;3</title>
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<!-- 9&#45;&gt;5 -->
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<g id="node19" class="node"><title>18</title>
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<text text-anchor="middle" x="1082" y="-231.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 9&#45;&gt;18 -->
<g id="edge26" class="edge"><title>9&#45;&gt;18</title>
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<!-- 10 -->
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<text text-anchor="middle" x="491" y="-306" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="491" y="-295" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 10&#45;&gt;3 -->
<g id="edge10" class="edge"><title>10&#45;&gt;3</title>
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<!-- 10&#45;&gt;4 -->
<g id="edge12" class="edge"><title>10&#45;&gt;4</title>
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<!-- 11 -->
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<!-- 11&#45;&gt;4 -->
<g id="edge11" class="edge"><title>11&#45;&gt;4</title>
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<!-- 11&#45;&gt;6 -->
<g id="edge15" class="edge"><title>11&#45;&gt;6</title>
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<!-- 19 -->
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<!-- 11&#45;&gt;19 -->
<g id="edge28" class="edge"><title>11&#45;&gt;19</title>
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<!-- 12 -->
<g id="node13" class="node"><title>12</title>
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<text text-anchor="middle" x="823" y="-311.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="823" y="-300.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 12&#45;&gt;5 -->
<g id="edge14" class="edge"><title>12&#45;&gt;5</title>
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<!-- 12&#45;&gt;6 -->
<g id="edge16" class="edge"><title>12&#45;&gt;6</title>
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<!-- 13 -->
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<!-- 13&#45;&gt;7 -->
<g id="edge17" class="edge"><title>13&#45;&gt;7</title>
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<!-- 14 -->
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<!-- 14&#45;&gt;7 -->
<g id="edge18" class="edge"><title>14&#45;&gt;7</title>
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<!-- 14&#45;&gt;8 -->
<g id="edge20" class="edge"><title>14&#45;&gt;8</title>
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<!-- 15 -->
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<!-- 15&#45;&gt;8 -->
<g id="edge19" class="edge"><title>15&#45;&gt;8</title>
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<!-- 16 -->
<g id="node17" class="node"><title>16</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M791,-401C791,-401 523,-401 523,-401 517,-401 511,-395 511,-389 511,-389 511,-377 511,-377 511,-371 517,-365 523,-365 523,-365 791,-365 791,-365 797,-365 803,-371 803,-377 803,-377 803,-389 803,-389 803,-395 797,-401 791,-401"/>
<text text-anchor="middle" x="657" y="-386" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="657" y="-375" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 16&#45;&gt;9 -->
<g id="edge21" class="edge"><title>16&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M660.081,-364.819C661.586,-356.422 663.434,-346.116 665.125,-336.686"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="668.621,-337.019 666.941,-326.558 661.731,-335.783 668.621,-337.019"/>
</g>
<!-- 17 -->
<g id="node18" class="node"><title>17</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M1113,-401C1113,-401 833,-401 833,-401 827,-401 821,-395 821,-389 821,-389 821,-377 821,-377 821,-371 827,-365 833,-365 833,-365 1113,-365 1113,-365 1119,-365 1125,-371 1125,-377 1125,-377 1125,-389 1125,-389 1125,-395 1119,-401 1113,-401"/>
<text text-anchor="middle" x="973" y="-386" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="973" y="-375" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
</g>
<!-- 17&#45;&gt;11 -->
<g id="edge22" class="edge"><title>17&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M971.578,-364.819C970.883,-356.422 970.03,-346.116 969.25,-336.686"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="972.725,-336.235 968.412,-326.558 965.748,-336.813 972.725,-336.235"/>
</g>
<!-- 18&#45;&gt;13 -->
<g id="edge23" class="edge"><title>18&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1032.6,-215.966C1004.11,-206.142 968.114,-193.729 938.129,-183.389"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="939.216,-180.062 928.621,-180.111 936.934,-186.68 939.216,-180.062"/>
</g>
<!-- 19&#45;&gt;15 -->
<g id="edge24" class="edge"><title>19&#45;&gt;15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1214.39,-215.697C1218.76,-207.644 1224.06,-197.894 1228.9,-188.982"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1232.02,-190.563 1233.71,-180.104 1225.87,-187.223 1232.02,-190.563"/>
</g>
<!-- 20 -->
<g id="node21" class="node"><title>20</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M1193.5,-329C1193.5,-329 1092.5,-329 1092.5,-329 1086.5,-329 1080.5,-323 1080.5,-317 1080.5,-317 1080.5,-300 1080.5,-300 1080.5,-294 1086.5,-288 1092.5,-288 1092.5,-288 1193.5,-288 1193.5,-288 1199.5,-288 1205.5,-294 1205.5,-300 1205.5,-300 1205.5,-317 1205.5,-317 1205.5,-323 1199.5,-329 1193.5,-329"/>
<text text-anchor="middle" x="1143" y="-317" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1143" y="-306" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1143" y="-295" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 20&#45;&gt;18 -->
<g id="edge25" class="edge"><title>20&#45;&gt;18</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1126.33,-287.689C1119.2,-279.215 1110.79,-269.22 1103.22,-260.226"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1105.69,-257.718 1096.57,-252.319 1100.33,-262.225 1105.69,-257.718"/>
</g>
<!-- 20&#45;&gt;19 -->
<g id="edge27" class="edge"><title>20&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1159.94,-287.689C1167.26,-279.128 1175.91,-269.016 1183.66,-259.951"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1186.35,-262.194 1190.19,-252.319 1181.03,-257.645 1186.35,-262.194"/>
</g>
</g>
</svg>
tests/test_scripts_labkey_to_snakemake_api/expected_output.md5
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View file @ 6f0edfc9
ba5ae0649d1fb82d94f8d19481498ffd config.yaml
9aece9e4acb17143b5e8f627968e03a5 samples.tsv
cb58e046242c2702038e6e21dbd0bdb4 samples.tsv
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