replaced synthetic test by new one.

images/dag_test_workflow.svg

images/rule_graph.svg

tests/test_alfa/expected_output.md5

tests/test_alfa/input_files/config.yaml

tests/test_alfa/input_files/homo_sapiens/quick_start.gtf

tests/test_alfa/input_files/samples.tsv

...d_end_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam

...d_R1_on_minus_antisense_Aligned.sortedByCoord.out.bam.bai

...aired_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam

...d_end_R1_on_minus_sense_Aligned.sortedByCoord.out.bam.bai

...ed_end_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam

...nd_R1_on_plus_antisense_Aligned.sortedByCoord.out.bam.bai

...paired_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam

...ed_end_R1_on_plus_sense_Aligned.sortedByCoord.out.bam.bai

...d_synthetic_10_reads_paired_Aligned.sortedByCoord.out.bam

...nthetic_10_reads_paired_Aligned.sortedByCoord.out.bam.bai

...c_10_reads_paired_synthetic_10_reads_paired_Log.final.out

...1_synthetic_10_reads_mate_1_Aligned.sortedByCoord.out.bam

...nthetic_10_reads_mate_1_Aligned.sortedByCoord.out.bam.bai

...c_10_reads_mate_1_synthetic_10_reads_mate_1_Log.final.out