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90b58bfa

Commit 90b58bfa authored 3 years ago by CJHerrmann Committed by BIOPZ-Katsantoni Maria 3 years ago

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Collapse directionality params in sample table

parent 943bd1ad

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README.md 3 additions, 0 deletions

README.md
pipeline_documentation.md 6 additions, 7 deletions

pipeline_documentation.md
scripts/prepare_inputs.py 31 additions, 64 deletions

scripts/prepare_inputs.py
tests/input_files/samples.multiple_lanes.tsv 5 additions, 5 deletions

tests/input_files/samples.multiple_lanes.tsv
tests/input_files/samples.tsv 3 additions, 3 deletions

tests/input_files/samples.tsv
tests/input_files/samples_alfa.tsv 5 additions, 5 deletions

tests/input_files/samples_alfa.tsv
tests/test_scripts_prepare_inputs_table/expected_output.md5 1 addition, 1 deletion

tests/test_scripts_prepare_inputs_table/expected_output.md5
workflow/Snakefile 41 additions, 10 deletions

workflow/Snakefile
workflow/rules/paired_end.snakefile.smk 5 additions, 5 deletions

workflow/rules/paired_end.snakefile.smk
workflow/rules/single_end.snakefile.smk 5 additions, 5 deletions

workflow/rules/single_end.snakefile.smk

with 105 additions and 105 deletions

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