LabKey-like input to Snakmake input
- separate organism genome architecture (different input folder) - change MD5 checksums to match the new output
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- images/dag_test_workflow.svg 15 additions, 15 deletionsimages/dag_test_workflow.svg
- scripts/labkey_to_snakemake.py 84 additions, 34 deletionsscripts/labkey_to_snakemake.py
- tests/input_files/homo_sapiens/annotation.gtf 28 additions, 0 deletionstests/input_files/homo_sapiens/annotation.gtf
- tests/input_files/homo_sapiens/genome.fa 168 additions, 0 deletionstests/input_files/homo_sapiens/genome.fa
- tests/input_files/homo_sapiens/transcriptome.fa 54 additions, 0 deletionstests/input_files/homo_sapiens/transcriptome.fa
- tests/input_files/project1/synthetic.mate_1.fastq.gz 0 additions, 0 deletionstests/input_files/project1/synthetic.mate_1.fastq.gz
- tests/input_files/project1/synthetic.mate_2.fastq.gz 0 additions, 0 deletionstests/input_files/project1/synthetic.mate_2.fastq.gz
- tests/input_files/project2/synthetic.mate_1.fastq.gz 0 additions, 0 deletionstests/input_files/project2/synthetic.mate_1.fastq.gz
- tests/input_files/synthetic.mate_1.bed 10 additions, 0 deletionstests/input_files/synthetic.mate_1.bed
- tests/input_files/synthetic.mate_2.bed 10 additions, 0 deletionstests/input_files/synthetic.mate_2.bed
- tests/input_files/synthetic.paired.bed 10 additions, 0 deletionstests/input_files/synthetic.paired.bed
- tests/test_scripts_labkey_to_snakemake/expected_output.md5 2 additions, 2 deletionstests/test_scripts_labkey_to_snakemake/expected_output.md5
- tests/test_scripts_labkey_to_snakemake/input_lib_1.mate_1.fastq.gz 0 additions, 0 deletions...t_scripts_labkey_to_snakemake/input_lib_1.mate_1.fastq.gz
- tests/test_scripts_labkey_to_snakemake/input_lib_1.mate_2.fastq.gz 0 additions, 0 deletions...t_scripts_labkey_to_snakemake/input_lib_1.mate_2.fastq.gz
- tests/test_scripts_labkey_to_snakemake/input_lib_2.mate_1.fastq.gz 0 additions, 0 deletions...t_scripts_labkey_to_snakemake/input_lib_2.mate_1.fastq.gz
- tests/test_scripts_labkey_to_snakemake/input_lib_2.mate_2.fastq.gz 0 additions, 0 deletions...t_scripts_labkey_to_snakemake/input_lib_2.mate_2.fastq.gz
- tests/test_scripts_labkey_to_snakemake/input_table.tsv 3 additions, 3 deletionstests/test_scripts_labkey_to_snakemake/input_table.tsv
- tests/test_scripts_labkey_to_snakemake/test.sh 18 additions, 2 deletionstests/test_scripts_labkey_to_snakemake/test.sh
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