Merge branch 'dev' into 'master'

.gitignore

.gitlab-ci.yml

README.md

Snakefile

images/dag_test_workflow.svg

images/rule_graph.svg

install/environment.dev.yml

install/environment.root.yml

install/environment.yml

pipeline_documentation.md

scripts/prepare_inputs.dict.tsv

scripts/prepare_inputs.py

tests/input_files/cluster.json

tests/input_files/config.mutliple_lanes.yml

...nput_files/pe_lane1/synthetic_split_lane1.mate_1.fastq.gz

...nput_files/pe_lane1/synthetic_split_lane1.mate_2.fastq.gz

...nput_files/pe_lane2/synthetic_split_lane2.mate_1.fastq.gz

...nput_files/pe_lane2/synthetic_split_lane2.mate_2.fastq.gz

tests/input_files/samples.multiple_lanes.tsv

...nput_files/se_lane1/synthetic_split_lane1.mate_1.fastq.gz