- Delete unused files scripts/fg_extract_transcripts.py,...
- Delete unused files scripts/fg_extract_transcripts.py, scripts/heatmap_and_clustermap.py, scripts/perform_PCA.py - Add rules (pca_kallisto, pca_salmon) that run zpca (https://github.com/zavolanlab/zpca) on genes and transcripts TPM tables from kallisto and salmon. - The output is wired to multiqc_report but the plots are not visualized to multiqc. Update documentation. - Update dag and rulegraph. Fixes #140 #142
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- Snakefile 106 additions, 6 deletionsSnakefile
- images/dag_test_workflow.svg 858 additions, 734 deletionsimages/dag_test_workflow.svg
- images/rule_graph.svg 439 additions, 391 deletionsimages/rule_graph.svg
- pipeline_documentation.md 27 additions, 2 deletionspipeline_documentation.md
- scripts/fg_extract_transcripts.py 0 additions, 104 deletionsscripts/fg_extract_transcripts.py
- scripts/heatmap_and_clustermap.py 0 additions, 112 deletionsscripts/heatmap_and_clustermap.py
- scripts/perform_PCA.py 0 additions, 210 deletionsscripts/perform_PCA.py
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This diff is collapsed.
scripts/fg_extract_transcripts.py
deleted
100755 → 0
scripts/heatmap_and_clustermap.py
deleted
100755 → 0
scripts/perform_PCA.py
deleted
100755 → 0
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