integrate completed rules into workflow
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- .gitignore 3 additions, 1 deletion.gitignore
- images/workflow_dag.svg 202 additions, 65 deletionsimages/workflow_dag.svg
- snakemake/Snakefile 33 additions, 25 deletionssnakemake/Snakefile
- snakemake/paired_end.snakefile.smk 15 additions, 14 deletionssnakemake/paired_end.snakefile.smk
- snakemake/preprocessing.snakefile.smk 0 additions, 28 deletionssnakemake/preprocessing.snakefile.smk
- snakemake/single_end.snakefile.smk 30 additions, 28 deletionssnakemake/single_end.snakefile.smk
- tests/test_create_dag_chart/samples.tsv 2 additions, 2 deletionstests/test_create_dag_chart/samples.tsv
- tests/test_integration_workflow/expected_output.md5 8 additions, 4 deletionstests/test_integration_workflow/expected_output.md5
- tests/test_integration_workflow/samples.tsv 2 additions, 2 deletionstests/test_integration_workflow/samples.tsv
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