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d35d5500

Commit d35d5500 authored 3 years ago by CJHerrmann Committed by Alex Kanitz 3 years ago

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feat: enable user to configure CLI params per rule

parent 378f6aed

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1 merge request!83feat: enable user to configure CLI params per rule

Changes 8

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Snakefile 404 additions, 90 deletions

Snakefile
pipeline_documentation.md 56 additions, 52 deletions

pipeline_documentation.md
tests/input_files/config.mutliple_lanes.yml 2 additions, 1 deletion

tests/input_files/config.mutliple_lanes.yml
tests/input_files/config.yaml 2 additions, 1 deletion

tests/input_files/config.yaml
tests/input_files/rule_config.yaml 148 additions, 0 deletions

tests/input_files/rule_config.yaml
workflow/rules/paired_end.snakefile.smk 100 additions, 28 deletions

workflow/rules/paired_end.snakefile.smk
workflow/rules/single_end.snakefile.smk 95 additions, 24 deletions

workflow/rules/single_end.snakefile.smk
workflow/scripts/zarp_multiqc_config.py 3 additions, 3 deletions

workflow/scripts/zarp_multiqc_config.py

with 810 additions and 199 deletions

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