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Commit e6012b4a authored by BIOPZ-Katsantoni Maria's avatar BIOPZ-Katsantoni Maria
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added dag image

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1 merge request!31Handle polyA processing in input preparation script
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<text text-anchor="middle" x="162.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<text text-anchor="middle" x="511.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="511.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
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<title>4</title>
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<text text-anchor="middle" x="649.5" y="-231.5" font-family="sans" font-size="10.00">quantification_salmon</text>
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<!-- 4&#45;&gt;0 -->
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<title>4&#45;&gt;0</title>
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<!-- 5 -->
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<title>5</title>
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<text text-anchor="middle" x="823.5" y="-231.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
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<!-- 6 -->
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<title>6</title>
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<text text-anchor="middle" x="1020.5" y="-231.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 6&#45;&gt;0 -->
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<title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="957.5" y="-93" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
<text text-anchor="middle" x="957.5" y="-82" font-family="sans" font-size="10.00">seqmode: paired_end</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
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<!-- 8 -->
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<title>8</title>
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<text text-anchor="middle" x="1162.5" y="-93" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
<text text-anchor="middle" x="1162.5" y="-82" font-family="sans" font-size="10.00">seqmode: single_end</text>
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<!-- 8&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
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<!-- 9 -->
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<title>9</title>
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<text text-anchor="middle" x="691.5" y="-306" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;3</title>
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<!-- 9&#45;&gt;5 -->
<g id="edge13" class="edge">
<title>9&#45;&gt;5</title>
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<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
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<text text-anchor="middle" x="1186.5" y="-231.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 9&#45;&gt;18 -->
<g id="edge26" class="edge">
<title>9&#45;&gt;18</title>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="507.5" y="-317" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="507.5" y="-306" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="507.5" y="-295" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 10&#45;&gt;3 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;3</title>
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<g id="edge12" class="edge">
<title>10&#45;&gt;4</title>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<!-- 11&#45;&gt;4 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;4</title>
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<title>19</title>
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<!-- 11&#45;&gt;19 -->
<g id="edge28" class="edge">
<title>11&#45;&gt;19</title>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="865.5" y="-311.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="865.5" y="-300.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 12&#45;&gt;5 -->
<g id="edge14" class="edge">
<title>12&#45;&gt;5</title>
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<g id="edge16" class="edge">
<title>12&#45;&gt;6</title>
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<!-- 13 -->
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<title>13</title>
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<!-- 13&#45;&gt;7 -->
<g id="edge17" class="edge">
<title>13&#45;&gt;7</title>
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<!-- 14 -->
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<title>14</title>
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<!-- 14&#45;&gt;7 -->
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<title>14&#45;&gt;7</title>
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<!-- 15 -->
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<title>15&#45;&gt;8</title>
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<title>16</title>
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<text text-anchor="middle" x="684.5" y="-386" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="684.5" y="-375" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<title>16&#45;&gt;9</title>
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<title>17</title>
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<text text-anchor="middle" x="1033.5" y="-375" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 17&#45;&gt;11 -->
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<title>17&#45;&gt;11</title>
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<g id="edge23" class="edge">
<title>18&#45;&gt;13</title>
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<title>19&#45;&gt;15</title>
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<g id="node21" class="node">
<title>20</title>
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<text text-anchor="middle" x="1253.5" y="-317" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1253.5" y="-306" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1253.5" y="-295" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 20&#45;&gt;18 -->
<g id="edge25" class="edge">
<title>20&#45;&gt;18</title>
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<g id="edge27" class="edge">
<title>20&#45;&gt;19</title>
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