Fix params.direcionality for kallisto rule

snakemake/paired_end.snakefile

@@ -335,7 +335,7 @@ rule pe_genome_quantification_kallisto:
 		-i {input.index} \
 		-o {params.output_dir} \
 		--pseudobam \
-		--{params.directionality}-stranded \
+		{params.directionality} \
 		{input.reads1} {input.reads2} > {output.pseudoalignment}) &> {log}"
 
 

snakemake/single_end.snakefile

@@ -259,7 +259,7 @@ rule genome_quantification_kallisto:
 		-l {params.fraglen} \
 		-s {params.fragsd} \
 		--pseudobam \
-		--{params.directionality}-stranded \
+		{params.directionality} \
 		{input.reads} > {output.pseudoalignment}) &> {log}"
 
 		
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