Skip to content
Snippets Groups Projects
  1. Feb 15, 2020
    • BIOPZ-Katsantoni Maria's avatar
      get Snakemake input from LabKey API · eea0206f
      BIOPZ-Katsantoni Maria authored and Alex Kanitz's avatar Alex Kanitz committed
      - add script that prepares Snakemake input files 'samples.tsv' and 'config.yaml' from LabKey table
      - script either connects to API directly (with '--remote' and related options) or processes a tab-separated LabKey dump file
      - add tests for both use cases
      - common input files for tests now in 'tests/input_files'
      - update all other tests to account for new file locations
      - update documentation
      eea0206f
  2. Feb 07, 2020
Loading