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  1. Mar 20, 2020
    • BIOPZ-Katsantoni Maria's avatar
      update of documentation · 46689ffd
      BIOPZ-Katsantoni Maria authored
      46689ffd
    • BIOPZ-Katsantoni Maria's avatar
      Fix Poly(A)-trimming rule · 392b04d2
      BIOPZ-Katsantoni Maria authored and Alex Kanitz's avatar Alex Kanitz committed
      In labkey_to_snakemake.py fixed the parameters so that there is 3p as well 5p polya
      feature for every mate, which can be matched to the -a -g -A and -G options of cutadapt
      depending on which is the sense or antisense mate the appropriate variable is populated
      and the rest of variables are filled with 'XXXXXXXXXXXX' which leads to no trimming by
      cutadapt. The poly-A trimming rules are fixed to contain all -a -g -A -G options.
      392b04d2
  2. Mar 19, 2020
  3. Mar 13, 2020
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