- Mar 20, 2020
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BIOPZ-Katsantoni Maria authored
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In labkey_to_snakemake.py fixed the parameters so that there is 3p as well 5p polya feature for every mate, which can be matched to the -a -g -A and -G options of cutadapt depending on which is the sense or antisense mate the appropriate variable is populated and the rest of variables are filled with 'XXXXXXXXXXXX' which leads to no trimming by cutadapt. The poly-A trimming rules are fixed to contain all -a -g -A -G options.
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- Mar 19, 2020
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- Mar 13, 2020
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fixed typos
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CJHerrmann authored
updated pipeline documentation described seqmode specific rules adapted to updates in Snakefile moved star_rpm and samtools index to main snakefile description linked README in documentation and vice versa
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