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Bedgraph to bigwig

I think that the bedgraph is not the ideal format for IGV. We should convert it to a different format (e.g. bigwig).

One solution is to use the ucsc conversion tool: bedGraphToBigWig

This is what needs to be done:

  • Create container with bedGraphToBigWig
  • Add snakemake rule that takes the output of the rule STAR_rpm and converts it to BigWig
Edited by CJHerrmann
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