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Clean up rule prepare_MultiQC_config

    • Closed Issue created by BIOPZ-Gypas Foivos @gypas
    • move logo path from params to input
    • replace \n with os.linesep
    • concatenate string with os.path.join and not with +
    • expand with snakemake wildcards whenever possible and avoid regular expressions
    • convert it to script and use shell instead of run
    • the order of the tools should be given as argument in the script (optparse, argparse)
    0 of 6 checklist items completed · Edited
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