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Preprocessing remove polyAs from reads

Should we trim polyAs only from the 3 end? Should we trim polyTs from 5 prime if the read is antisense? Should we trim both polyAs from 3end and polyTs from 5end if directionality is random?

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Alex Kanitz added To Do label 5 years ago

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Alex Kanitz @kanitz · 5 years ago

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@gypas @zavolan: could one of you perhaps reply to this? Isn't this already taken care of?

Edited 5 years ago by Alex Kanitz
Alex Kanitz added Discuss label 5 years ago

added Discuss label
Alex Kanitz unassigned @zavolan 5 years ago

unassigned @zavolan
Alex Kanitz changed milestone to %v0.1.0 release 5 years ago

changed milestone to %v0.1.0 release
Alex Kanitz assigned to @katsanto 5 years ago

assigned to @katsanto
BIOPZ-Katsantoni Maria mentioned in merge request !31 (merged) 5 years ago

mentioned in merge request !31 (merged)
Alex Kanitz closed via merge request !31 (merged) 5 years ago

closed via merge request !31 (merged)
Alex Kanitz mentioned in commit 641f2cbb 5 years ago

mentioned in commit 641f2cbb

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v0.1.0 release (expired)

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