Singularity image pull kallisto:0.46.1 does not work on macOS 10.14.6
I downloaded singularity image from https://sylabs.io/guides/3.5/admin-guide/installation.html#installation-on-windows-or-mac and installed it.
I created the conda environment described in the README.md
.
I tried to test the pipeline with bash tests/test_integration_workflow/test.local.sh
with an error:
Pulling singularity image docker://zavolab/kallisto:0.46.1.
WorkflowError:
Failed to pull singularity image from docker://zavolab/kallisto:0.46.1:
Manual pull with singularity pull docker://zavolab/kallisto:0.46.1
also failed:
INFO: Converting OCI blobs to SIF format
INFO: Starting build...
Getting image source signatures
Skipping fetch of repeat blob sha256:1ab2bdfe97783562315f98f94c0769b1897a05f7b0395ca1520ebee08666703b
Skipping fetch of repeat blob sha256:dd7d28bd8be53eeb346a7895aa923cc5fd8707cd893b5a96f6de37d0473431f8
Skipping fetch of repeat blob sha256:af998e3a361bf15f05a9cf4686abe0bc34affbb1bb1d541f76553c5842e6e4fb
Skipping fetch of repeat blob sha256:4472c44eda494691180c6ffd55a0002bae646a88f6c6dd5d12a20f61dfa0f419
Skipping fetch of repeat blob sha256:fedc4e4b98712b62a79088bfdb972619178cbe3ee7e38fd7b8cc2094f9c869ed
Skipping fetch of repeat blob sha256:5f772ece11abe21976d0733f64254535aa8639fc79f64ceaebe10f7bb4c2ba4f
Copying config sha256:dac50cf7f0da9df0c78c016b65ee417f839feecf8121fa06338a4f8523cb1518
5.36 KiB / 5.36 KiB [======================================================] 0s
Writing manifest to image destination
Storing signatures
FATAL: While making image from oci registry: while building SIF from layers: packer failed to pack: while unpacking tmpfs: unpack: error extracting layer: link /var/folders/vf/7wlpb9vn7lv39_qm0dctk2gh0000gp/T/sbuild-163465129/fs/opt/conda/pkgs/ncurses-6.1-hf484d3e_1002/share/terminfo/N/NCR260VT300WPP /var/folders/vf/7wlpb9vn7lv39_qm0dctk2gh0000gp/T/sbuild-163465129/fs/opt/conda/share/terminfo/N/NCR260VT300WPP: too many levels of symbolic links