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clean up tests

Alex Kanitz requested to merge clean_up_tests into master
  • set up integration test for Snakefile in dedicated folder; current test case was left untouched for the time being, despite requiring large input files
  • set up DAG chart creation test in dedicated folder; script creates an SVG representation of the workflow DAG at images/workflow_dag.svg
  • both tests have been added to the GitLab CI/CD configuration; the latter test ensures that always the latest version of the
  • all tests are now located inside subdirectories of tests/; test scripts and configuration files for test runs etc. have been moved to the appropriate test directories
  • for the time being, required input files for each test are placed within the individual test directories; a layout for common test files should be introduced later and paths and bind paths in tests adapted
  • make script scripts/labkey_api.py executable

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