get Snakemake input from LabKey API

get Snakemake input from LabKey API

• add script that prepares Snakemake input files 'samples.tsv' and 'config.yaml' from LabKey table
• script either connects to API directly (with '--remote' and related options) or processes a tab-separated LabKey dump file
• add tests for both use cases
• common input files for tests now in 'tests/input_files'
• update all other tests to account for new file locations
• update documentation

closes #47 (closed)

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• b8c01442 - readded input table to snakemake test

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• 7c9fd5fc - fix typo

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• 6c810bb9 - use other input dict

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• cb0dcb53 - update tests

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• 5be364d0 - update docs

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changed title from Labkey table from API snakemake input to get Snakemake input from LabKey API

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mentioned in commit a654943c

merged