fix(prepare_inputs): support relative paths

To ensure that output files for tests are identical regardless of the environment from which they are called, the script for preparing inputs now allows skipping of path expansion, essentially allowing the specification of relative file paths (e.g, relative to the location of the script).

Changes:

• add CLI argument --no-process-paths, which, together with setting --output-dir="", allows for the functionality described above
• update test tests/test_scripts_prepare_inputs_table/test.sh to add CLI arguments --no-process-paths and --output-dir=""
• update md5 hash sums for output files created by that test
• rename script to prepare_inputs.py (previousy labkey_to_snakemake.py (accounting for the use case where the input table is not derived from LabKey); also renamed the table with information to map LabKey to Snakemake table column identifiers accordingly

Fixes #120 (closed)

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 <g id="node18" class="node">
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 <g id="edge17" class="edge">
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 <g id="edge18" class="edge">
 <title>18&#45;&gt;1</title>
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 <g id="node20" class="node">
 <title>19</title>
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 <!-- 19&#45;&gt;1 -->
 <g id="edge19" class="edge">
 <title>19&#45;&gt;1</title>
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 <g id="edge20" class="edge">
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 <title>34</title>
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 <text text-anchor="middle" x="519.5" y="-826" font-family="sans" font-size="10.00" fill="#000000">start</text>
 <text text-anchor="middle" x="519.5" y="-815" font-family="sans" font-size="10.00" fill="#000000">mate: fq1</text>
 <text text-anchor="middle" x="519.5" y="-804" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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 <g id="node36" class="node">
 <title>35</title>
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+<path fill="none" stroke="#56d8d8" stroke-width="2" d="M1070,-838C1070,-838 769,-838 769,-838 763,-838 757,-832 757,-826 757,-826 757,-809 757,-809 757,-803 763,-797 769,-797 769,-797 1070,-797 1070,-797 1076,-797 1082,-803 1082,-809 1082,-809 1082,-826 1082,-826 1082,-832 1076,-838 1070,-838"/>
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 <text text-anchor="middle" x="919.5" y="-815" font-family="sans" font-size="10.00" fill="#000000">mate: fq2</text>
 <text text-anchor="middle" x="919.5" y="-804" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
@@ -615,20 +615,20 @@
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 <g id="node37" class="node">
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 <text text-anchor="middle" x="337.5" y="-666" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
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 <!-- 36&#45;&gt;17 -->
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 <title>36&#45;&gt;17</title>
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@@ -639,38 +639,38 @@
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 <g id="node38" class="node">
 <title>37</title>
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 <text text-anchor="middle" x="381.5" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
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 <g id="edge50" class="edge">
 <title>37&#45;&gt;17</title>
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+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="381.3529,-262.088 377.0344,-252.4133 374.3771,-262.6694 381.3529,-262.088"/>
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 <g id="edge52" class="edge">
 <title>37&#45;&gt;18</title>
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 <text text-anchor="middle" x="522.5" y="-666" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
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 <title>38&#45;&gt;18</title>
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 <g id="edge66" class="edge">
 <title>38&#45;&gt;32</title>
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 <title>39</title>
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 <text text-anchor="middle" x="778.5" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">merge_TIN_scores</text>
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 <g id="edge53" class="edge">
 <title>39&#45;&gt;19</title>
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+<path fill="none" stroke="#56b1d8" stroke-width="2" d="M1260.5,-252C1260.5,-252 1168.5,-252 1168.5,-252 1162.5,-252 1156.5,-246 1156.5,-240 1156.5,-240 1156.5,-228 1156.5,-228 1156.5,-222 1162.5,-216 1168.5,-216 1168.5,-216 1260.5,-216 1260.5,-216 1266.5,-216 1272.5,-222 1272.5,-228 1272.5,-228 1272.5,-240 1272.5,-240 1272.5,-246 1266.5,-252 1260.5,-252"/>
 <text text-anchor="middle" x="1214.5" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">alfa_qc_all_samples</text>
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@@ -736,7 +736,7 @@
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