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Add biocontainers image for tin-score-calculation

Merged Add biocontainers image for tin-score-calculation
feature/biocontainers_tin-score-calculation into dev
Merged BIOPZ-Gypas Foivos requested to merge feature/biocontainers_tin-score-calculation into dev
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@@ -561,7 +561,7 @@ rule extract_transcripts_as_bed12:
)
singularity:
"docker://zavolab/zgtf:0.1"
"docker://quay.io/biocontainers/zgtf:0.1.1--pyh5e36f6f_0"
threads: 1
@@ -944,7 +944,7 @@ rule kallisto_merge_genes:
threads: 1
singularity:
"docker://zavolab/merge_kallisto:0.6"
"docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell:
"(merge_kallisto.R \
@@ -1025,7 +1025,7 @@ rule kallisto_merge_transcripts:
threads: 1
singularity:
"docker://zavolab/merge_kallisto:0.6"
"docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell:
"(merge_kallisto.R \
@@ -1072,7 +1072,7 @@ rule pca_salmon:
threads: 1
singularity:
"docker://zavolab/zpca:0.8.3-1"
"docker://quay.io/biocontainers/zpca:0.8.3.post1--pyh5e36f6f_0"
shell:
"(zpca-tpm \
@@ -1118,7 +1118,7 @@ rule pca_kallisto:
threads: 1
singularity:
"docker://zavolab/zpca:0.8.3-1"
"docker://quay.io/biocontainers/zpca:0.8.3.post1--pyh5e36f6f_0"
shell:
"(zpca-tpm \