Skip to content
Snippets Groups Projects

Fix params.direcionality for kallisto rule

Merged Fix params.direcionality for kallisto rule
kallisto_directionality_bug_fix into master
Merged BIOPZ-Gypas Foivos requested to merge kallisto_directionality_bug_fix into master
Compare
and
2 files
+ 2
− 2
Compare changes
  • Side-by-side
  • Inline
Files
2
snakemake/paired_end.snakefile
+ 1
− 1
@@ -335,7 +335,7 @@ rule pe_genome_quantification_kallisto:
-i {input.index} \
-o {params.output_dir} \
--pseudobam \
--{params.directionality}-stranded \
{params.directionality} \
{input.reads1} {input.reads2} > {output.pseudoalignment}) &> {log}"