Update home authored by Alex Kanitz's avatar Alex Kanitz
# Rhea wiki
## Discussion points
* What is the user story?
* What are the defined use cases?
## Road map
* Test current version with real-world data
* In the meantime: Plan future development
* Plan upstream API
* Interface with SRA
* Derive library params from data
* Plan user interaction (CLI, UI, website)
* Prepare for integration into web service?
* Discuss code organization, especially with respect to extending functionality
* Tools for individual samples
* Tools for multiple samples
* Tools for comparing groups of samples
* Discuss reuse and storage of results
* Minimize storage
* Minimize reruns
* How to determine whether samples have been run (database, folder structure, hashes)
* How to pass data between consecutive stages/pipelines (compare code organization)
* Plan downstream API
* How to extend MultiQC report?
* Snakemake report?
* Directory and file naming structure
* Prepare for integration into web service?
* Overall code organization
* How to coordinate different pipelines
* How to deal with interactive parts in between
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