First Ideas on the Postprocess module

primingsitepredictor/createtranscript.py

+# -*- coding: utf-8 -*-
+"""
+Created on Wed Nov 16 17:48:04 2022
+
+@author: baerma
+"""
+
+# with open("RIBlast output example.txt", 'r') as file:
+#     content = file.readlines()
+#     print(content[3:][0].strip(' \n').split(',')[-1].strip('()').split(':'))
+#     #create a instant of each transcript class
+#     print(len(content[3:]))
+#     print((content[3:]))
+
+class CreateTranscript():
+    def __init__(self):
+        with open("RIBlast output example.txt", 'r') as file:
+            self.list_of_interactions = file.readlines()[3:]
+
+    
+    
+    def generate_interaction_list(self):
+        interaction_list = []
+        for i in range(0, (len(self.list_of_interactions)-1)):
+            current_interaction = self.list_of_interactions[i].strip(' \n').split(',')
+            #print(self.list_of_interactions[i].strip(' \n').split(','))
+            interaction_list.append(current_interaction)
+        return interaction_list
+
+            
+
+transcriptlist = CreateTranscript()            
+print(transcriptlist.generate_interaction_list())
+
+#go from interaction list to transcript list? -no we will serve them a interaction list.
+            
+  #          print(content[3:][0].strip(' \n').split(',')[-1].strip('()').split(':'))
+

primingsitepredictor/postprocessingmodule.py

@@ -4,11 +4,14 @@ Created on Wed Nov 16 16:47:20 2022
 
 @author: baerma
 """
-import csv
+
 
 with open("RIBlast output example.txt", 'r') as file:
     content = file.readlines()
-    print(content[3:][0])
+    print(content[3:][0].strip(' \n').split(',')[-1].strip('()').split(':'))
+    #create a instant of each transcript class
+
+
 
 
 #os.chdir('C:/Users/baerma/Desktop/PhD-Local/Lectures/Programming for Life Sciences/priming-site-predictor/primingsitepredictor')