reorganised according to Alexes Feedback

.gitignore

Archive/CONTRIBUTING.md

Archive/PrimingSitePredictor_main_1.0.0.py

Archive/RIblast-master/LICENSE

Archive/RIblast-master/Makefile

Archive/RIblast-master/README.md

Archive/RIblast-master/RIblast

Archive/RIblast-master/dbRNA.fa

Archive/RIblast-master/db_construction.cpp

Archive/RIblast-master/db_construction.h

Archive/RIblast-master/db_construction_parameters.cpp

Archive/RIblast-master/db_construction_parameters.h

Archive/RIblast-master/encoder.cpp

Archive/RIblast-master/encoder.h

Archive/RIblast-master/energy_par.h

Archive/RIblast-master/fastafile_reader.cpp

Archive/RIblast-master/fastafile_reader.h

Archive/RIblast-master/fmath.hpp

Archive/RIblast-master/gapped_extension.cpp

Archive/RIblast-master/gapped_extension.h