feature: added run_read_sequencer, simulate_sequencing and refactoring to cli.py, modules.py

read_sequencer_package/fasta_testfile/50_seqs_50_1000_bp.fasta

+>1|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 481 bp
tgagcactcggtgccaagggcggggatacacagatggttggctgatacaaccgggacttaaattccctagactagatctgtgttggaacgcctctctacgagaaggcgaacgaactggcgccgaggcgatcgctaacatcttcgtctcgcttgaaccacacaatggatgattcctccctaggggtttgacaatcaacctggatagcgtttaatatagatggctggttgatttgtaaggccttcacagactactcagagcaataagtgaccccccaacaatcagaggctgatcctctgctccgaaggcagcactcatcatcggtattctgttcgctagaacagatggaatgcatgcgccccgctaagtttgattgagttaaacttattgtcttatagccatagccaaggtatctatggtgtcgtacgtgacagttccgtgtaggcatgccatcccgcctcatgcgtcatgtcatactgaggc

>2|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 495 bp
ctgaatcaggtgtaggttctttttacgtcgtttaaggagctacacggtatcttgttttcagttaaggtgccacacccccgggtggatcatccgtcagctttcctacaattaggtaactggcgggatcatttagtcttgtattaagacgctcgcgcccggggcggccggcttgtttgtggagagaaacaacaagtctgagtatagattaaatacaactggtttactggcaagtcagcgcgtaacaaccggtgagccgctgcgcatgcttactgcaatgaacatcttggcacgatcctgcgatagcgtgccctgacccgtgcacctcgtcggtgaatttcgtcgaacaagcggatcgccacgccacgtgagatcaagccaaaacacaaaaaccacaggcaatagcgacgctgaagtgtcatttcctacctaaaacttcggttcttcttcttaagagggcattaagtccggataactactgcatggcacctgtgtatg

>3|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 193 bp
acttcagtactggaaggatctaggaaccattaatgcgagtgtggtgacgccagacgacccccggtgttctgccaccttctttggataggagaaccgtcactcgccccggaggccccacggataagaagggtatcttgtgatcacgcgaatgactcacttgcgtaagtaatctaactttgtttttcgctataaa

>4|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 625 bp
acgtctggagcgtgggttgacccctgtacatggttctttccggatccttaacgtgccgatacaactcaaaggtaactgtgcttaccacttccgaagctacatgcctctaacaaagtactttcgaggaggcactcaacccccggagatgctttgcgcggaagcagagatcgctgctcaaaatttggaatcactttcgtgcgagacccaaacaatttatggtggattcaagcgaacgagtcatgattacagatctatcaatcgaggagaggacggcttcgccgtttccttttaatgtgaaactagagccttcctcaatagtgaggcccttgcccggtgcccgggattggctcaaaagtaccggctcaggaagtctctcaactgccaagttggttaaagtagcttcggcgtaaggaacccgaccgaccatcagtgtcatacaaggaaatatttccaggaacctagtttatcttgaagttctgaatgagttaggtaatgtcggcccttcatgacagggggacgtgctcgcgagctcaaaccaagggggctaagggcgacggtgcttagtcatctactagatccacccacatgacgattgtgtgggtcctttcagccttttacttctcgc

>5|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 845 bp
agagcgtacggcgcgcatcgtataccctacgagggcggcgtgtggaggaacgctgggctgacactgtagaagattagatacacttgtccctaaaattaacccttaaccgctattagccgtgaacgcttcctaatatttcaagccgtatagctaagtggagaatgtggagccctggtcaaatcacgagccaattagccctagacggacagcacatctcgtcgcgttaagcggaacactcagcttttattacctagtgctcagcctggtttccatatgctctaaccgaactgatgcatacttgggtctgactaagggccatggttcgcgtcaagcaggccgggttcagaagccctggttgaggggcggatactccagtcgcccgcaggtcgcgatccctgggtttaaactacttcacgacacgtacaaacacttactacctacccctacaacactgagtgaaaagtgctagctaagtatgtccgtcgagataggactcgactttagaggtctgcacgaatgtcctggtaggatgcccaccaaagggaataatccttcgggtacgttttgggcaggtgtgacgtgagaaatccgcacccttatcgccgtaaaggttatttgcggggtgcgtggttacttgagttgtccctctcgagcggggtaacaaaaacctactgtatatctagtctggtccgaaattctttatgctgccgacatgctgcgacccgactacgtgtgtaagagtcattatttcttaatagtttaacaaggctacacccctatatgataaaggctattctccatagtgtaagagtctgttgcaccgacaacccggcgtctggctacat

>6|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 703 bp
tgcagtcgatgtgctattcgttttaggcagtctacgcgcttagtaactcccacggccatagacttatctcagacatggaccatgtcgatatcggacgccgtcttaccacatttttcatagcccttcataaggcagcgtgctcttactgcccaataaggtggacgattccgaccctaggcgaaccagcgctatagatggaccttctaattgatgcgcaacgtgattgtttccttggtctgggttagcatttcggtagcctaacagtcactccagttcgctaactggcctggatgagggccccatactatatggtgatagcaacgacaccccagtgtattgacctgttgtgtcctggtgatgttgaacgtcaccaagatagtctctatgtgactccatagctaaggagggtgacgtgatgcgccggccccgccccagacactgctacagaaagcttaaggcgagcgtatgaagagcctttgggcatacactctcgtatctagctaggtcaaggtgacggaatgaatctgctatatctagattggcacgcgataatctaggccaattgctggtaaaacacatggtcttattgtatacccaatcccgatttgaatttcctgcaacgaggcagctcgcagaggaacttaagtagagtgaaccctggagccgaatcccagagtcgtcggggacaaagtatatgcaacgg

>7|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 243 bp
actctttagaatgggtttcactaatagtacgtgcatacaatttcgtcagaaagggcgcttgctaagggacacggatcaatgatgaccagacttatggtgtcaggtctcactatattacatatccggaacccgtgcccgcaccacgcgctgggtctaggcgaccggtgcatcatctccgcgtctctagaggattctctcggtaaatgctgaattgcgtgagatcaaatccgtatgccagtcatg

>8|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 863 bp
attggcccggtccaggacagagccttatattgctactggtatgagaaccgttctgacgtaaacttgatggctttacgcctgcacgggcttcatacacacatgaccgtggacaaagtcgcccaggccctcgaatagggtgtaatggttaacggttagtgccaccccaatgggtgcgaggcagtaagagtgtcctatggcaaaactctcctcgtttcagaagggtcgctcctctagcctccttatcccccctataatagtactcgccgggtacgagccggagctccctcgagaagtcatcctgctcttaccacaggcagagaacgcgcaaggtttagatactaacttcattcatccaccagctggacaaggaactatagagagatgacattaggttatagctgaggggcgatcccattacccgaggctcgcaatagccttctactctgccaatgatcagtattgtaaacatggctggcgtccctaaatacaaagtcccgctgcaattgatggacttagacgaatcactagcaaagtcgataaatgtttacgctatccaatcccgcggttttaaaggtctgtactatacattcaatacggggggagatgtgtattgagccactagaggtatctaatgggggattgaaaaccgttttatagtcagtctaagcagcgccccttatgtcgctgtgatcggcagggttttttccgagatgtaaggcgaccgatatttcgttcttggcttggaagtagtacccgcgatgacctaccaagtagtccgacccattgatagactatggataccgctcccctccggtcacgaagcaccttagtgaggcatccgccgtgatgtgttgtttggagtg

>9|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 494 bp
aagcgaaactcctagaacttcccatcaggcaatcgtgtcccacgaagcacggatactacgggcactagttgaatggggggtttttttcgtaggtcgtaataggtactcggatagtcggcccagagttatgcttaagaatgcgctgcttaattcaatgtgactgccgttgtctccgatcagatccaggtgatgattgcgatcgcagcgacatatgtctcgaaagacgtgtcgtgaataagcctgtaagcccaatgcaacatggttccctcaccttgtagctgatgtaccgtgtttcaatctccgcggctatcgatcgccctttcatgcaagctgtaaccagacaggaatctgccctgccatcgttatgtatgcgtattacgactgattcgcgcaggcatcccggctaaggccactgggtataatccacagacattgcacgtcatatagaaaacgacctgtgttcacaatcagcccggggggagtcagagtagtat

>10|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 86 bp
atcctagcgccaaagatttactgttatggggtcgacgaacactagccgataatgccgtcctgggatctctagcctagtattatgcg

>11|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 360 bp
cgcctgagggtcctaaatctgacgtatgatcgaagagattggaaggtcccggcgggtcaccccacgttgcgatcatggccaaggccatggtttgctcaaaaatcccacattcgccgtcttacgcgttaggacctcactatcccacagacggtgcgttaccttgtagttgacgcgggatcgtggtgataacagctatttccgagacttcatattcttttacatagcggcttaccgtagtgactccatacattatttgcctattttgtagtgccccgaacagtaaggggaagccaactgccgcggtagctcatagacagacgtggtatacacgctacaaataagcagtggattgagacatga

>12|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 140 bp
gaattcctggggatttactcacccccgaggcggacaagatttccagctggatcaccgagggttacttaatcccttcgatgctttcaaaggccctaatcagtattgagcaacgaaagcggagtcgttagtgtccaagttgc

>13|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 832 bp
aatactctcgttgaagcgtcggacagtaaagtgagagatttcggcccacggtagtcggacattctcagtggggagcgaagagttgcgcttagagccgacgtacacgatataacctcaattgaaaatcgctatgtgcatcgttagggcctccggcgtgctgtttcggcagctgagtgtgagggtataacttaccttcgacccgaattgtctcgcggaaatcctaggcaagtaatccacttttggtacgggggagctagttcctctaagacgaacaagtgcactcttcacgtatagtgccctacagttgcgctgttcatggaatccgactaatagaccagtcccgaccccagtgcttcgactgttacaacagttatcgtcgcgcttcgggacgaaatctcggcattactatactcgacatacacagaaagctatggaggtcgccgtaatattcacctcgtcgagtctgtaggcgtagtaaacgttacataatagctaatgggactttcgaacggaacattatactcatcgtgaaacgtttggtcaccacactgtagaatccacctggatcggtgctagttctagtcattatgccctctaatactggtcgcgtagcagggcgcaaggtacagtgcgataccggaataggggtccacacctcacgtccacgtacctatagtcacgccgtatcgaattcattgcactccttttaagtattgagcgacgactggcacccggaatagttagtttgttcggaacgcccccacgcacgagtcgtgcgaattgaatgccgttagaacttggtgcatgcgccgtcgctactattaacggacag

>14|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 296 bp
atcggggtgcgaaatcccctgagctggttgactacatacgtaaccacgttccgtgcgtcatctaagcgtatcggctcatactggtggtaactagacttggtgaaccctaggtgccggcatatcgaggtccgcatccaaaataactatcgctatagctacatagacatttactcgcaatattacacgaaccgtacgtccctcggtattaacgtaatggttaaagtctctaattccgctgcagagcggcgggataaagacgccggtgtggcctgaatggtggatctgtccgtagtacc

>15|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 515 bp
accttcaatttgttcgcccgggacaagtagaaattactgtaaactaaacttaacctattccttgttaaagtccgcaccaagtgtactgtaagaatggtcgctcgtaataataacgagaagatcctcgagccgtggtctgctgcaactaccttgagcggtacatcgatgtcccactctgggcggggatcaggggcgagacttgtggtgaggccaaagaatggcgcatatgtaggcaccatacgtcgatacgttccaggagtagaggcctcgaacatacaccacgataagtctacagacgcatagatgacgtggaactcgcatctaacccctggaattctctgactgtcaccctgagccttggtgggccaccgttagggacgtgcaactaccctttctggtgcgaatctcgtttccttagtgccttcacacaaggaggccaattgtttgctaccccatccagacatttgggcattcttgtgagtcccgtaagtcggtcatgatgggtttaagttagt

>16|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 820 bp
ccggctcaatcctgtagaaccgcgtacaacacacccaagctataccgcacacggcgccttagcaaccactgcttatctgcgtattatacctttacaatcattacatttgatctatctgtgtaccggttttttttgattcaattcgctggattacgacctcccggccaaaaattctcaattcatcgttaacagacgtatttgaagataatcattcaacgtgaactagcacttggtcacttggtacgccaaccaagctgtgctttggggcaaccctttataactcacatgccgtcctaggactttacctagtccacctagcgtgttacagataccgattgcatcaagtcctcgacggaccgcactcgtcgcagttaaaggcaggtctatcagggagataccgtgtgttgcgccaattaatcttagaaaattatgcttgcaatagagcaggaaccctgaaagaatatggttctgtgaaaaagcgtgcactcccgtgtgtgctcgttggttactagcaccgacgttgggtgggcggaggggtcatatgcctgcgccgatcgatatagcgacgctcgtatcaagttgtactgcggcaacacgggtggctcggtgtagaaataaaacgggtgccctcgggtcgaagcgaagcgcaaatgctcgtgggccggagcggccgggggcgggccactatgggcattacaagccagacaggtaagagggagtgctttgatgtgaacagcaccccttccgctggacggggttatgacaagttcgccaagattttacaatatccttaacagtggaatgtccttaccgggtttac

>17|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 791 bp
attgttagggcctgtccggaaaagatcaacggaagatattcaccagcacctatgctgactcacgtagttcccgacgttcagtcccctccaacgtggaaggtaggacccatctccttaacgggatcgatcggtcttcctgtgaaagttgctcagagtcctcaaggacgtttttgggtgcgtgtacggtatggttatggtacgtgtctgtgacagagggtattcttactggttaagtgacccatatgaccacctgacgcccgagcatagacctgtaggggtcgacgcgagagatggcagcttttgtcatatcatcggttcatgtcaaggttggaggaattcaggcatacacaatctcggcttagtctgcgctgctcctgtccatacctggcacttggagtcaatggattcccaaaaccgacaaatgagtcaacgctctactttttgtttgctggaacgaggcaatatccattgattcccttctcaacaaatgttatcgcggcaggaggacacaccggggccgcccgggcatcgattcgtaaccgcctgaatgtgatacaaccgataatccacttgtaagaaaatgtattctagggacttggcaccgtacggtatagtagctaatctatctaccgctagctcccggcgaaacatctggcggctaacgaccgcacacgtccaagtaattatcggcactgcgatctgagggatcatctcgcggacggagattaactagttaagaatacctatctccatcgcaatgcgactgtagccaatagctatttaaggcgtgt

>18|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 328 bp
accgattacaggcagtcggccttgtccgctcgtatatccagggatgttccaccgaaagtgggagtgtggcacttattggtaaaaggcatttttacgaacgacactgataggattgatcactcaagaaatgttctcgaccctgaggtaggagtcttaacagacggacatcctccgtagatacgtgagaattaagggacgcatgtcgaaaacgcttggaatctactgtagtggcccaccttacgcttcttccaataactcccttcatagtccggcaacctcggtgggggtttcccttaggcctcggtgattgctagaacctccgcgcaaa

>19|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 249 bp
ggagtggaaaattctgtagtccgttggcggcgaccgcaaaccagaataatatggtcacgttaggccctcgggccccttcatatgtacggagtcattgaattagcattatactaccgttacgcaagaccctatcccatccgcgactgtcaccactgctgtaaggttgcaaggctgtttcaatgtaaagtaggcgaattctgacgtgggctgataacgaatcccccgggttatctagtgcaagtgctatcc

>20|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 440 bp
atcttaaacagcccaatcggctcgccgaccaatttcccgcttcacagtacgcggaagaatctgcagatagaagtcagccctctcacgtcaataggaatgctgcccgtcatgtttaactactcaagttttaaggtgtcccttatcggttccaggatcatgtctgaaggaagatggtcgcaacgaaatctggagtggcatacatcgttcggtcgaagcataatctcagacgttatctataaagttagggcgctgtatggattgggattcaagctcgaagcctgttcctgccatacagcgccttagttaggatcacgcctgaaacgtcacgacggtgctaagcatcatggggcgtggcccggacgattatccatccgctacttgcgtatggtggtgtcacccaaaatatatgtcgcgaagagtgtccgtgtcatgctaccgag

>21|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 840 bp
cataactcgtgagtggccctgtacaagtcattgcatcacaatccttgcaatttgctcctttggccaagcgtacaagaccccggacccatacgctcccggctgataaactgctacagcatggtatatccggatgatgcccctgaaaactgcggaagtcaatttgttgatgaatccccgactttccgctgttcctgtggatggtcgaatgccaaatgaagagctgctccccccttctttaatatcaagcactacaaagataaagcctgtttggctgacggcgagccctcccctatcgtacgcaggatagatctggccaagtccgctgacgatggggtccacactgccagaagcgtagatctttgttgagtcggaccggaagagctaacctagctaagggtgtagagttttcaggagcttagagtcatgtcggattatggttggcgttacggacgggctccaaacgatcaaactctagtggccactttcatggccagaacggaaagagcggcgatgtctgccaagtaagaccttcactaccttccgttgattacagacgtcggtttgacagcttggggtcttatccggcgtttcagagaacttttggagcactgagcgcagacaccgacaagcttagctagacagctgaaccgtatcacttttgaaaccagagaaaacgcatagggtggttgaggtaccagaaggtgtggtttctaagttggaaaccacgtacatcactccttagatctccgaaagcgtcttcgcgtgttcggactccacatctatgcgtttactagcaagcggtttctgaccaatatgcctatgatatatcttaggtcggga

>22|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 234 bp
caccgcgaaagtgactcagttttcccggtcttatcacggtcgttgtcgtccagattccggttgttaactgcgggagctataacacttattccttactgcgacggctgatccactaagaacagttcatagagctcggctatataatttgaagacatagattccacggtacttgtagcccataaccgctgaggaggaacgtccaacggttcgcgcggagcatgtgacgcttaaagg

>23|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 917 bp
atcaagtgattacctggtaacccgccgctcttgcagtgttcaccctttgtgtcgtcttagtgtttgtacacgttaaggaaaagcgttagcttaaccattacgccccccaaagcccggtgtgtagttatctacatgccgtgtcaaagcggtgactaaatgtttatcaagttctgatgacaacgtgagctcttaaagccattgactagtataagcacggaacaatgataccaggcaagcttgaatataggataaggcctctaagctcgaagcggatcttacggaggtgtgaatcaacagcactcgagtagtacaccgtggatggttagtgaagttggtggtaaaagagtaaagggttctaacaccttaacaatgcgctacacttcaccatagccgagagtcagtatgtggtaccgttagttctttcaatcccaagagcgcataactgcttgccgccgcttagtttagggacattaatgtatatgatgaggggatgctcccttcattcggaccgaccccgacacatcgtatcctaatggctaaccgctcgcagccccctgcctgcatgcggtccgccgagcagtcgaccaagcactgtgaaagaatttgggaaatcgaacccagactaccggaacttaactcacgaccttcgatcttctgatcccagtttccatacttatatatactgcgcgaactgcagcggactttcctccggcccagcctatcgagctttgcgattgtattcgaggggcgtcggtatcttttatccaacagctgtcatcagttcggaccggggggataaaagcgccagactggatctggggtggtgtcaaccatgtgagtcaatcgtccccgagtgccgagggcctagggttcctacatggtgggtgctcctgtcgaaagaatcgagtgacgactcg

>24|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 676 bp
cacacggcatcgcaaagcgagctatccagagatgatacatgtggttgaaggtgattgcgtcaacatgggggttgctcagtttggttggtcaatcaacggtggcagaccatgcgataacgatgatggtaagactgtaaggtaagttaaatactctcgtctgccagttgggtcgtcaacgctgcagagacgccattcttcccagaaggtccgagctttctacagtgccgcggcgtcatgaccaaaggggtccaacctcgcagtaaaatgtctatgcttctggtttggaatgagaccgggccatcccgtgataaagagcttcatttatcagggaaagcgtcgcgtagctctagaatttatttatcttgagtcaaatgccatcatctaatgaatccactgagctggtaaggcctaggcaggcacggaggactttatagtccacgaattcgggcatccgcattatcttgttcgtccgcacttaacgactccatacccgaccctgttactctatcgagtacactacggttaaccgggcgtcattgtccacaggttcacagcaacattgggcgaagaggagtgctaactaagcgccatgccccattctaagtttacaacaaagtatttccaagcggacggtccgtgtttcagcctcatcttgcccccctggacattccgatgg

>25|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 870 bp
ctgatcaccaatagcttgcgcttaacacacgcgccttacaattatatgacgcccttgccaatgacagatagagccattaatcgtggaaaccaggcatttatacttgtccgatgtatcgattctcctctatctacagagcccggacatgcgaaatatcaaaattccatgtatactgaataaatacattgggcaagccgggctcatgcagcaatcccagcgttgccttacgcaaagatatcttacggagttgcctttagattaacagcacgtgttcaaaaacctagccaactctgtcggtctagggcggaacgaagtagccagagtcgccccacgcagttcacgattacagtaatccccttatggttggggcatcgggaaattaaccctaagatgcgccccttgagcgccgaaaagggatcagttcagagtttccccccattcattgcaaggcactgttcaggcgctaacatgaggcccaaaaactagctggttacttcctgcgtcgcgcaactgttcatgtgttctttccgtacctgtgccaaagtccatgttgaggtacacccttgggtgtgttagaaagtggcttgccctcatagctgctatgggaaatttgagttgcgaccgtcgggcctcagggcgccaggtttggctagtaggcggcgtcttgtgctgcgtcaactgcgaaatgatgtccggtaggcttttatgggtcgttgcggccatgcaagagcatgcggccggttgtcggttacagagtcttagatactgtcaaactcgtacacaataaagagaggtactaatgaatcatgggcagcgcgttcatagtatgtgaaacttggcaatcagtgcacggttggccccacggtccta

>26|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 751 bp
gggtgcgttatggggactaaagactgttactaccggtactccgccttatagagccgtcacgtattaatcagctatcaacagatactatcgtcacagccctccttctggcgaaggatctgagcatttgcaaagctataagttggtacgcaacggtagagggcttcgtagtcggggaaagggcttgcagtagtataggccgtaacttatctgttgcaacctcaaccgcacgaatcgattactctataactgccctcaatacagtatggttaccagtcaccttcacactgaagattaattcgcctacagaaggagaacatctaggtctccgtagaatagcagtcgtgacaacacgccgaaacttgaggcaagctcaggcgtgtgtagcgagctttcagcttaggcgggcattacctaattgttacggaccccccaaaaattgtcgactggtttcttctatgcgactataaaacaggaataggaaagtgggtgcatgcaacttgttcgtgtaccgttatgatcgattcctatgtgggagtttgcgcccacctcgtctgtgctgtcccggcgtactgcaccacgctgatttatcttgtagtaaggatggggtcaatacgagggctgaggcgtagagcccgacgggaaacacattcgtcacgccgcaaatcgcgtcgtcctcagacctcagcaagaccttttggtcagaatatggcggggctctaattgcctttacttccactccgtgaacttccgc

>27|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 574 bp
gtactgcaccttgcactgctatctacaatgccgagggtcgccctagtgctttgcatgtttggcctctacctacgagtctacgcgggcgtttttaagcaagctacgatcatcttgatccaagggtacgaggccccgcagaccaatggaggtcgtgaccaccctcgtgtatgcctcgcactaagcgagcattctggtatactgtctctctcctgtgataataacagtcggctcgatattcagttcacatgaaacagtatgttatataggtgggatggttataacacggaaaggtgaaaaagagtgcggaagttacttaggagtgccgtccttgatcaagcatgcgtagcaacaagcgcccgtaacaaccggatggaggttctgggtgaacaagggcgcccctacaggatatacaggacttgccctatggtccatttatagtatggtggtataccccggctcacctgtgaattagattgcgaaccaaataaaggatcatcgggttcacatttaggttagagccctcatacgttaacctgccggtacaccacttctttcgccgccgcatagtacatgc

>28|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 169 bp
agctccctaaacaacacccgcgtaaaaccttcagttatggtgccgactaaccctgtggatgtcttagcgctctcgttccgatgggtgctgatactagtaaatgagactcgagaccgagaacacgcaacggctacaacctggtcggttgttggggtttttataatcagtg

>29|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 408 bp
tgcagtgatgcatcgataagaccgcatagttacctccttacaggtgacgctaggctaattgggagtgctggcacttgtgccctacagtcaagcgctcacgcggtgttctcctcccgcaatcttagatattaggctctgtaccgcacgaaggatgaattttcttgactattggtccctgtttacgagggcttacctagagtgaggatgaacataaacaaggcctacttgacttaaggcttccaaatcacttgagggcaaatgactcctcaaacgcgagtgccagtactatccgtgagggaagaaaatctgccaaaaggccttggccgagatagattccgccgcccagcttacggggcatggtctataagttccgttttagcatgtactgtcaacaagcctgcgggatcc

>30|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 52 bp
caaagcgattcgggttaacgcacttaagagttcgacgtaggttagtcccctc

>31|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 581 bp
tgctctgacgtgtaagcgccttcgataacgtctttgcagcgccccacaaagtaaggaccggtctaacagggcttccgaatcaatagactgatagtaatgggatcctgaggctgggacccgacacacggcatattttactagaaacgctgatttaaactccaattatccttgacgcactgagccacagtcttagacgcagaatgtccgcaggagccctgtctttcccctaaatcattcgcggcatttgtttacgggttaagtcctgcggatcctagagtctgggccccgtacaaccaggaagagactgatactccgcgtattacggcccataagaacggtgggcctcgtttgtatttgactactgtacactcctgcctactgctgaacttaatgatgcgagatgaaagtcacagggggtgtagatcaagttgcacttaggtttcttccgatagattactatgcaagctatccacatgtgagaagctatagccacctctcttaacttctggtaagggcgcattgcggagcggcgagtacatatggtcttaatggacgccggtcgccgtccagatggagatagc

>32|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 249 bp
gcggaactacctctctaagaccgcacaacaagtgtagtagatgaagatcacgcagagtgctcggcactgcatttttatacgtcgaatcagaaacgaggttcctcctctaggcttgttaaaaatccgggcgcgatgggctggtaatctgtggccatgggagcctcgccatttaaagattttggttaaggctcctctgttgtgtccatcacccttgaacgagcccgtacaaaccgtgtacgatgttgacac

>33|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 297 bp
gccctcgcgccagcttacttttagaaaacatcgaccggtaagagatacctgggtgagctgggcttcacgacatgttcttaaatcaatactctaaatctgctttgtagcatgcctcaagtaaaaaaatgtgctggttccgcacaggtgtgacgattaacgttgcgcccgtttgcgtcagtccagatcaccgatcttccacaccaccggtgggctgccggactgcaggtaatgactcctggctgcattctctgacataaaggttgaatagaacggcgtccttgagaaggttatggaacg

>34|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 573 bp
gcctaggggtcttgaccacagggagtacgagcattgatcattggagcaggtggctaatattgatagtggttagaccaccggcgcatcatcgtacgagcgcgggcgatacgtgtctttcaccggcgcactaatcttatcttacttctcaagccccgacagcatgtacgccaagtgttgttctgatgaaactttcgaaatagcaactgttagtcagttatagttggggagggcagtgaatacctcaaatacacccaagaaataacttcgaagcggcgcctatatcacacccctgtttcttatgactggtttgcgtgtgctaacagcaatcaagtacctgaccgtatgtccttgaagcttgaggatagtacccggatccagaggactgaaaaccgtgtctacgctgttctcacgccgatgtttgaaataatgagtgtagcgtctgccaaactggcttaagcactcagcgtgaggcgagattctatggccttgcgttttcgtttcgcgcgaacggtgacaatccagaaccccgaccttaaatatgcgacgtaaccctcctggccccgtccgagtgaa

>35|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 559 bp
gaaaaagtcgccccattcagttacaatcgtcttcagaagccagctcggttggggctatctgcggggtaatgcaacagggggctaccagacggtaaaccagggtcttgctattggtgttacgaaacaaaggagctatgcgacctcattagatcgagattactctcacaggcagctccggccatagcacaactaatttcgggtgtggagctcaccacaggaacatcttgtgcgtcctttgttatttaattgtgcattgtaatgcaccggaccccgggaacatacagccattatctgtgttgccgctcatccgttgtacttcttaatacaatcagaattgtactcaaccgattgccaagcacgtacgcgtcagatacacatccggagtcagtcctcgtcctgctttgactcatgccaaggagtgcgcttcgcgcgggtgaatctcgttatcgatttatagtatttatcttatcgcggaagaccacgctagtagactgggtaacgtcgcgattgtcccaaagccagagtgaagataggcgacatcctctgtgagaggggtacc

>36|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 187 bp
ctaagtccttatctatgatgcatctttcgttactgcgacaatatccgagacgagcagagttacacgccgaggtgtaaacgaatacgattgctatatgcaacgagttggttacacgcgtgaaggcgaatgtggatgctgcacttggagtcccattttaccggccgcacgtgctagctcactcaccttg

>37|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 549 bp
ttcatatggggatttggaatcgggtttgtgcggaatatgcccacgagactgcttatgtcaacgagacgacccattgtcacgttgtaaggccaccaataacacacaggtcttcgtttgctgtctcagggcaatcgcatcgacaacatcgtatggataccgttttttatcagcttacggcgcatcatactaataaggtgtttgagagggcgcagactcgaagcagtgtgatcttcccggttcgaagatgcaaaaacggtcctatttcgatccaaaactcagcgcactagtccaatgcttttttggagggttttgtagaacaatcgaggcgcggagcagcgaaatagaaaacgggccagtgaacgacggatccacacggaggtttcactcgaggacgtgtgccccaacaaccggttatctccttacttattcaagtgtgcctgcacctcgataagtctaaactccgcctatcccagcgtaggtcatagtcgtaactcccaacaggtgccctgcgacttgttcctcgccggtgctgcaagaaggtagtgttct

>38|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 916 bp
gtggcctaccataaatcaatttgggttaacgctctttgatctacgcactatgttgattcacttaccccttgtcaccgggcagaagagagccagtttaggtgtggttgtatttgccaaaccgcaaaccgcctaatgagctggatccggccatggaattaatcccgtcgtttgactcgaggtgttcaaagactgtgcaacacgacgtgcattcatcactagaacttaatctagaccaggccttgtggccaggagaggcgacgtgatattgccctatacacagataattatatacccctcgcgcgcaaaccatctcggtctctttccaaggtgccagcacgcgataactcgtatctgggctggatgtgcgtttcccttagcccactcccccttttaagtactagcgtactcgggttctacggagtgcatggagtttccacaaagggacgcaacataatttaaagaaccgagccttacgaggagcttttgcaggcttccgtcgctatccgtcgtcatggagtgaggctttgaggaacgagcacttgggactctatataccccggagtaagtatctacagccggggtctgacgccaaccatttgttactttgttgcgagggctactcccgctagtagtagaactgctgtcaggcaacgacactaattaagtggccttgacccgtacgacttgagaatcttcggttcaatattccccgtctcgaaaggctgcttcaagtgcgctacacattacatacaactaggcgggagggctccaaaccggcggagctacaaggagtctaatagtgcgaaaaaagggccgcgcgacaaatgagtctggtgtggcattcggaacgagtgggaacgatccgaatccgctttgacaattaaccgtcctaattaggatttcgtgaatagtagtg

>39|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 848 bp
accccggtcgctttggccggtcgtagccctaatcaattctgttcgtatcactaaagtaacggtttgaaatcctttgcaaacttgatctgggtatatgaaccggtatgcggggatagtggtaaataagtagtttacgagctgagcgtggattatcccagagaagttgccttaggtccagagcccgcacctacaatcactcgaggccggtcgagcgttgcgtggcaaggaaacccagccggtcaccctaccctcaaactcacgtcattgatccaatcatacatggcgtctctcacggtggtgttgtttgctgtttcttgcggcccgtttattcgtgaacacgacgcaagccctaccgacctcgctagccgatctagacgactgggtgggttacccttcccagaggagtgactatggatatgtagtccttataggcatccagggcaccggatgcactagtcacacccctgctcagatagcgccaaaaagtgaattcaagcgttcagctggacacccattaaacacgagtgctactgggcttacataatacgagagaagattggccgattgttgcccttagaacttatgtgaggtaagtctgagacgccgattgcggcctagacattagtaaaaataagataagaactactcccactgactcgttcgggcctcctagagctagggcccccctgagcatgttcagttatatcctacgggctagcgtaaggttttttcgtttatgcgaggcttgagacgcgacatacgagcattccgttgctggggcgatagaccacgatacgctcagaagagggaatactaaattgataaaatgctttcattgtctagcacct

>40|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 289 bp
agagcaaaagaaagtctgctccgcgtgacacacttgctcgttgtagtaactgcacgcgccgtctactcgacagggaccccccgtcggttcctctctatagcaatcgcggaagtggttccctgcctcccgcgcagaagttcaaactagtaatccttaatgacttgtggggggggagatcagtttcttccacaatggagtaaacttatgcgagaatcaagatcgcagaggccattttttgatgatactgtcagatatgtggttagccgtatcacgttaccgacgcagaatt

>41|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 642 bp
ctggggaatgaccgtaccgatctaattccccgtcgaaaaacttatgacgcgcagttgtccttatgcttgagacatgaatccttgccccatattggcgatcttggccaatgagatctgtcgaaagtactggaggccggtaaattgggggctctagaggtccgcccctgaaggactaacgtgtgtgtgtgtctacgtgtcgggttatcagcgtgttggacgatggccgtggattcaacgcatgctagagagctaatgatcctccgaagtcaaaagcctcagtgcttcgatttatgagcgcgtggcgagtacgtctagtgatactctaactactataaacaaggcctcgtcgcagaatccttcaatacattgggccccgggagataagtcggaccaggactaaattacacatgggggccctaaccctaggtcttaacggatggcttgataaagcacgcgctaatcttccctatcgtgcacatatctcttgctaccccctgctaaatcgctcgggccttggcctacacaatatgcaactggaagtgtggtttcgcaagggtataaataactgaactgtgaagttcccctgttacaaagccattagccgctaatgaacatagacctaacggactcgctccttgtgct

>42|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 993 bp
gcaagaagccaaaaaccttgcaggaggtcatttaagtttacccgcgcataagcagagacggacctctctgagatctcgcaccgcgcgcccggccggcactatcgatgctagactagggttggtgactagcccgtcaaaaccagcctaaacgcaaagattgtaggcgctagtccggaactgactgcttcgtgtcggtgggagcctagtatgtttccgggtctatgacccctaaaatcatagacgtgtcttaatagctatacctgacttactttgaagtacttgccacgacgagtttatgagatattagtattctcagccttgtgctcctcctacgaccgggatgagtcatctggtcaccttgatccgtacggaactatagatagtcacttcgaggcatgcgcgtttggacacctactgcttctaagtcatagcgctcgcgtaatgcagcctcgcatgttctttacacgacacgagggattttgattgttataggtgaacgtacagacaaaatcactgtttcagaatacttggcttgtacgatctccagtactccccgtgccggctcggcgaacgggataagacatccacggcattctgtagtggttgaccgggtttgacagactcccttatctggatggggcccgataacgatgagcatagaaccgttgtaagtctcgattgtcacccgaggacaaaattttctcatcctaggttcactcagcgtcgttagagcatcagagttccgtctttaggttactttaaagatcgaaagaaaccttcgtgctggtaggaagtctcatataagtagccagcgtggaccgaggaatagattgttatgttgcatgtacttctgggatcgtgtccagccaacttcaccgcggcacacgtcgatggacccaggaaatgcctcggggtcagaatgagccttgtgcggcccgactgctgaacgacgtataaaatagagcgtcgtggaccccatacaacgcacataac

>43|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 473 bp
ggttgtccaggcgcgagcaagtagctgactcgctaatcttaacgagtattgcttaggacttccaaatactccaagacgtcaatacgctttatctttgtgaagtcatcccggaccgagcgcttgggtcgtgatttaaaatcccctgtgatgtggctacaggtgcggcctatacagccgagaagaaggccgtctttaggcgtccaatgaaccgttacagggacacaccaaactgcgccaactgatcccacgggtcacggtacgctctaagaccagtcgggattctgacttaacatcgcagcatctgatcgagtggcttctccagcgagcctagggcattacaccgtgcgttcgcaaactctgtatgcttgtcggaaggtatagcttgagcccctttggttcatatcgttaatacttaagtaagtggggtcaatctttttgaactaatcaaatgactcactggcgaaaggcagacg

>44|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 272 bp
gtagaacttgttccccatggacaatgctagttccgttaatgccaggtattcatgtgccaagcgcctgcctggggaatacgagcctctctacaaacttacggccaccatgcttaaagattcggtgacttcactaatgacctatacaagtaatgcggaggacgctgtcgcttattgctctttgctaaggccagttatgtccgtcagtcaacgatacgctgcggcggtgggtgacggcactagaccggaagcctgatgacaagttcgaatcaata

>45|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 860 bp
aaaagcatcactctaacgacgctaccgtctgaatagatcaagattgctatcggttcgaccttgatcgcatgtgaacccgcccaaaaacccgtctcgacaaaagttacgtcgcatgggctgcgccaccggatagctcctagcttatcttataaatcaggtagagctacaacatggtgctatgacaactggagtgtcatcgctttggcgaaaccgtaaagggtgggaattgctgcattctcaactgggccgaactattccgcattcggctgctcacaaatcgtggaatgtgtccttgaacgtcctgcttaaccatggtcattgccacgaaggccctggtcggttcagaagtgtatcagacttacaagggtccgaggaggttccggcggggggagaacaagcatcgaacacgactcactgacctgtaggggtattacctatcactgtgacccacatctgaggtactggtccattccataaagatcgagtcgtcttcctaaactgggcactcatacgtacaggaccaaaaaagaggttggttggtgaccgtgccacgcctggcggtcagaatgagttaatgggtcgaataggcgatcttgataacaatagagattcacaacgtgggctcaagccgcttcctgcgaccactattagcgaactagggctatcgccacggaaaagtacttctaacatatacccctatggagtttcagtgtgaagccactgagcagtggcgaggttgtcgcgtcttttgttcaattgttccctgtactttaatgttcgtatcggatttgctttccgttgatagcgaatctctaccctgtcgctgtgtctagcatccgtccgcgaagccggtgacacat

>46|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 884 bp
aagcctctacaggctctgcggtttggctttacttaacggtgagtcaggaaaacattactgctacgttcaccgtgttcagagatagagagtacattagggaccaatcacaacgttcgccagggcaccgcctaatccgcgttgttagcaagagtacaggctctcgtatactttcagacccttcaatactagacgacaaattgcagcccggggtcatcggtcgactcagatacgtgctaacgagtaccaggtctaccgttgcaacgttggatgcgttatactcggcataaggcgatgccctttgacatactgcactacgctttggcgatagcgctacagttgatgaccgggctaactgcacgcgcgcgtagacgggagcccaattttttgaaattggcgacgaccgacttacgcacctatgcctcgcacgaccagtagctgtaagctctggtcgttggcattagattggcgaaccgctgaccacgatttaagccttccaaatcgttctactatacgagctcagcgtggcggtatgctagttgataaagtaaggacgttctcccgggtccagaagcccgatccacttttaaaagggctgatgcataaactaagactgtatgtctggttcaagtcttcagtaacttcagcctatgtttccaagtgacaacttggagaggggatgctgcggattctgatctaagctgttatatatctgttatcacctcgaaactatcactctggatgaccctcctatgtgcgctcagcgtagaccttccgctgtactttcataaacatagcatggagtgactcagaagagctttaaaggcgggagatcataggtcgcggtcgagcgaatgggaccgaggggaatgccaccaattcccgct

>47|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 888 bp
gcgccttgaagaggcgaggtctaaaggcaaaaatttagatccgccctatgagacggccgacgcggagaattccctaaccactattgtcctctgcatcgatatcaggaataggcttacctgcaatctcttatggtgatagactgtttgggagctgaacctgagacgcgcacgaaatttggaaggatcaaataggccccgcagtctctggtagacttctgccgagcggactagcttggctaaggtgtacaagcctaaatcgtttttcacatcaattttatagctgattatagaggaacgacgcgatcgtgcagagtgatggtcaaagggtcggtacgtcggatgcccagaaatatggtctgaggggtagcctgttcagaggcgcttaacttgctccttgctcacaggagcgatatgcgctagggttctggacgatcgaccatcattgtaacccatccaatccgtccttattgatggcccactcccgcatgctggtccgaaggcgatcccgatatcccgagcactagaattcgacacagtctgtaccgtgcctaattcttatcagaccctttatgcccgtctcggccttagagttaaatggactatctccacggaatgggcagtgcatcgctaccaagggtcgcccgatcccggggtttccacttcggatcatttttgtggatagtacatatcccacttcaacaagatagcaaaagtccaagacgcagtagagcacgtttctcaaacaacggaccatgcacggttcccggtaacccagtccagggaacaatttgtggttcttctttgaactagttgggagcaacagactcaggggctggccagtagtattgaaccaagcgttttttacaattactttgctggcgctaactg

>48|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 588 bp
catcaagatgggttacgtaggaccgagattcagtctctgggttagagccgacagcggggccgctacatagtacacggcgaggaatgcggggttgggctgaaccgtacacagtgggctagctgcggtacctgccaccggcatgcgtttaaatcctttcctttggcgaagccaactgccgacgtccgcaacagagactcgttttccgaccccgttactaaatcagctaactggcgcctgaatcctcttacgtcggatgttaattagtgtatagaatatcggagggttgagtgcgacgcgcttcctgttctccgctacttcttgtattatgatttggtcaaatacagtcgacaatagtgctcgacaggatataacgctatggcaccccatagtatcagctaaacgttcatatcctagtagcttagaaagaaatttaatatgcagtggagcctggaaccttacttattgtcggctcatcccgcaatactcgcaaataatcacgcatggtgccggacggtacgggccacgtcaattaggtaaacgaaacacgttacgtggactgctcacccaaccttgagggactgtctactt

>49|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 626 bp
taacctcagtctcgttcccccctcggtagttcggacccttattcgcttatctcacattcatcactgtagaccaaggaccgggcatacttgcggatatctaccaggactaggcacttagggatacgctgttgaatacgggtttcgtcccgtgtactcaagtgtagtttaagataggtacgagtgctagtacatcgtacaatttacaactgacttaaacgagagtttattatgtcttgttcacttgttgacacgcctgggaaaataataaaaggcaacgtctaatctcagacccgttgattaactaagcagcgtgacgtggagtcatacctgctatatttgggaggtgggaagtattggtgaaccgagcccctcctagccgtggcggtaatgacattaagaaggcgcagttagtcagcactcgaggcaggtgcgcctctgcacgtctgctgatatcgtcggaacgagttaacgctcccgcccacccatcagtcagggaccactttcgacacctagttcgagatttctcctttcggtaaaatcgggctcaattaaggcttgggtaccccggccagggaatatgcacatgagggaactatgagactgcacctaccccgcacggatggagg

>50|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 214 bp
taactgtcggtcactgctcatcccgactagttcggctcactagacttactcgcggaagcgagaagtaggacgtcgtgtaatactccaacgtcgttacgcaatgttgtaaaacttcatcgcattccgtgcatggcctaaacgtgcagcattatataacgctctttggtcttaatatccatcgcgggagtaacgcgaaggggagacgtgtgcctga
\ No newline at end of file

read_sequencer_package/read_in_FASTA.py

-'''
-This function reads in FASTA files
-
-argument is file_path
-
-it returns a dictionary with the sequences
-
-
-'''
-
-
-import sys
-
-def read_in_fasta(file_path):
-    sequences = {}
-    f = open(file_path)
-    for line in f:
-        if line[0] == '>':
-            defline = line.strip()
-            defline = defline.replace('>', '')
-        else:
-            if defline not in sequences:
-                sequences[defline] = ''
-            sequences[defline] += line.strip()
-    return sequences       
-

read_sequencer_package/read_sequence.py

-'''
-This function reads sequences
-arguments: seq is a list of sequences 
-padding_probabilities is a number??
-
-returns sequenced element
-
-'''
-
-import random
-
-
-
-def read_sequence(seq, padding_probabilities, read_length):
-    reading_element = random.choice(seq)
-
-    bases =["A", "T", "C", "G"]
-
-    if read_length > len(reading_element):
-        for nt in [0:len(reading_element)]:
-            sequenced += reading_element[nt]
-
-        for nt2 in [len(reading_element):read_length]:
-            sequenced += random.choice(bases)
-
-    else: 
-        for nt in [0:read_length]
-        sequenced += reading_element[nt]
-
-
-    return sequenced
\ No newline at end of file