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Commit 861b94b7 authored by Michael Sandholzer's avatar Michael Sandholzer
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test functions added

parent aae07c8e
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1 merge request!32test functions added
...@@ -2,6 +2,7 @@ import pytest ...@@ -2,6 +2,7 @@ import pytest
from readsequencer.read_sequencer import ReadSequencer from readsequencer.read_sequencer import ReadSequencer
sequencer = ReadSequencer() sequencer = ReadSequencer()
...@@ -9,19 +10,20 @@ def test_chunksize(): ...@@ -9,19 +10,20 @@ def test_chunksize():
assert sequencer.chunk_size == 10000 assert sequencer.chunk_size == 10000
def test_run_Input(): def test_run_Input():
assert ReadSequencer( assert sequencer.fasta == None
fasta="./tests/fasta_testfile/50_seqs_50_1000_bp.fasta", assert sequencer.read_length == 150
output="./tests/fasta_testfile/", assert sequencer.output == None
read_length=1000, assert sequencer.chunk_size == 10000
chunk_size=10000,
)
def test_run_Random(): def test_run_Random():
assert ReadSequencer( assert ReadSequencer(
output="./tests/fasta_testfile/", output="./tests/fasta_testfile/results.fasta"
read_length=1000, ).output == "./tests/fasta_testfile/results.fasta"
chunk_size=10000, assert ReadSequencer(read_length=1000).read_length == 1000
) assert ReadSequencer(chunk_size=10000).chunk_size == 10000
\ No newline at end of file assert ReadSequencer(
output="./tests/fasta_testfile/results.fasta",
read_length=1000,
chunk_size=10000).fasta == None
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