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Commit 861b94b7 authored by Michael Sandholzer's avatar Michael Sandholzer
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test functions added

parent aae07c8e
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1 merge request!32test functions added
......@@ -2,6 +2,7 @@ import pytest
from readsequencer.read_sequencer import ReadSequencer
sequencer = ReadSequencer()
......@@ -9,19 +10,20 @@ def test_chunksize():
assert sequencer.chunk_size == 10000
def test_run_Input():
assert ReadSequencer(
fasta="./tests/fasta_testfile/50_seqs_50_1000_bp.fasta",
output="./tests/fasta_testfile/",
read_length=1000,
chunk_size=10000,
)
assert sequencer.fasta == None
assert sequencer.read_length == 150
assert sequencer.output == None
assert sequencer.chunk_size == 10000
def test_run_Random():
assert ReadSequencer(
output="./tests/fasta_testfile/",
read_length=1000,
chunk_size=10000,
)
\ No newline at end of file
output="./tests/fasta_testfile/results.fasta"
).output == "./tests/fasta_testfile/results.fasta"
assert ReadSequencer(read_length=1000).read_length == 1000
assert ReadSequencer(chunk_size=10000).chunk_size == 10000
assert ReadSequencer(
output="./tests/fasta_testfile/results.fasta",
read_length=1000,
chunk_size=10000).fasta == None
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