Read Sequencer

Overview

Read Sequencer is a test python package to simulate sequencing. It reads fasta files, simulate sequencing with specified read length and writes the resulting sequences into a new fasta file.

Installation from PyPI

Read Sequencer requires Python 3.9 or later.

Install Read Sequencer from PyPI using:

pip install -i https://test.pypi.org/simple/ read-sequencer==0.1.1

Usage

read_sequencer --input_file_path --output_file_path --read_length

Contributors and Contact Information

Christoph Harmel - christoph.harmel@unibas.ch
Michael Sandholzer - michael.sandholzer@unibas.ch
Clara Serger - c.serger@unibas.ch