Skip to content
Snippets Groups Projects

build-job

Passed Started by
Hugo Madge Leon
@hugo.madgeleon
1Running with gitlab-runner 14.6.0 (5316d4ac)
2 on zavolan-group-ci-shared-runner 2xM8DJPt
3 Preparing the "docker" executor 00:01
4Using Docker executor with image python:3.10-slim-buster ...
5Pulling docker image python:3.10-slim-buster ...
6Using docker image sha256:abe91ea92d3a872c530d42e6b9f7410e531eb835399328e98ecf8949bb39dd66 for python:3.10-slim-buster with digest python@sha256:6de9ce15892da6d86c17af9895ab96ccdcc77c078e5ce22e9b296be3616f8a38 ...
7 Preparing environment 00:00
8Running on runner-2xm8djpt-project-2339-concurrent-0 via zavolan-ci.scicore.unibas.ch...
9 Getting source from Git repository 00:01
10Fetching changes with git depth set to 20...
11Reinitialized existing Git repository in /builds/zavolan_group/tools/terminal-fragment-selector/.git/
12Checking out c6b96e6b as main...
13Removing .coverage
14Removing .pytest_cache/
15Removing term_frag_sel/__pycache__/
16Removing terminal_fragment_selector.egg-info/
17Removing tests/__pycache__/
18Skipping Git submodules setup
19 Executing "step_script" stage of the job script 00:18
20Using docker image sha256:abe91ea92d3a872c530d42e6b9f7410e531eb835399328e98ecf8949bb39dd66 for python:3.10-slim-buster with digest python@sha256:6de9ce15892da6d86c17af9895ab96ccdcc77c078e5ce22e9b296be3616f8a38 ...
21$ pip install -r requirements.txt
22Collecting argparse
23 Downloading argparse-1.4.0-py2.py3-none-any.whl (23 kB)
24Collecting biopython
25 Downloading biopython-1.80-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
26 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 58.1 MB/s eta 0:00:00
27Collecting numpy>=1.23.3
28 Downloading numpy-1.24.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
29 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.3/17.3 MB 101.4 MB/s eta 0:00:00
30Collecting pandas>=1.4.4
31 Downloading pandas-1.5.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.1 MB)
32 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.1/12.1 MB 115.2 MB/s eta 0:00:00
33Collecting pytz>=2020.1
34 Downloading pytz-2022.7-py2.py3-none-any.whl (499 kB)
35 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 499.4/499.4 kB 78.1 MB/s eta 0:00:00
36Collecting python-dateutil>=2.8.1
37 Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
38 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 58.1 MB/s eta 0:00:00
39Collecting six>=1.5
40 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
41Installing collected packages: pytz, argparse, six, numpy, python-dateutil, biopython, pandas
42Successfully installed argparse-1.4.0 biopython-1.80 numpy-1.24.0 pandas-1.5.2 python-dateutil-2.8.2 pytz-2022.7 six-1.16.0
43WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
44$ pip install -r requirements_dev.txt
45Collecting pytest
46 Downloading pytest-7.2.0-py3-none-any.whl (316 kB)
47 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 316.8/316.8 kB 14.2 MB/s eta 0:00:00
48Collecting coverage
49 Downloading coverage-7.0.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (215 kB)
50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 215.9/215.9 kB 49.1 MB/s eta 0:00:00
51Collecting flake8
52 Downloading flake8-6.0.0-py2.py3-none-any.whl (57 kB)
53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.8/57.8 kB 23.6 MB/s eta 0:00:00
54Collecting flake8-docstrings
55 Downloading flake8_docstrings-1.6.0-py2.py3-none-any.whl (5.7 kB)
56Collecting mypy
57 Downloading mypy-0.991-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
58 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 87.1 MB/s eta 0:00:00
59Collecting pylint
60 Downloading pylint-2.15.9-py3-none-any.whl (509 kB)
61 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 509.3/509.3 kB 74.6 MB/s eta 0:00:00
62Collecting attrs>=19.2.0
63 Downloading attrs-22.2.0-py3-none-any.whl (60 kB)
64 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.0/60.0 kB 23.8 MB/s eta 0:00:00
65Collecting iniconfig
66 Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB)
67Collecting tomli>=1.0.0
68 Downloading tomli-2.0.1-py3-none-any.whl (12 kB)
69Collecting exceptiongroup>=1.0.0rc8
70 Downloading exceptiongroup-1.0.4-py3-none-any.whl (14 kB)
71Collecting pluggy<2.0,>=0.12
72 Downloading pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
73Collecting packaging
74 Downloading packaging-22.0-py3-none-any.whl (42 kB)
75 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.6/42.6 kB 14.0 MB/s eta 0:00:00
76Collecting mccabe<0.8.0,>=0.7.0
77 Downloading mccabe-0.7.0-py2.py3-none-any.whl (7.3 kB)
78Collecting pycodestyle<2.11.0,>=2.10.0
79 Downloading pycodestyle-2.10.0-py2.py3-none-any.whl (41 kB)
80 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.3/41.3 kB 13.6 MB/s eta 0:00:00
81Collecting pyflakes<3.1.0,>=3.0.0
82 Downloading pyflakes-3.0.1-py2.py3-none-any.whl (62 kB)
83 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 21.8 MB/s eta 0:00:00
84Collecting pydocstyle>=2.1
85 Downloading pydocstyle-6.1.1-py3-none-any.whl (37 kB)
86Collecting mypy-extensions>=0.4.3
87 Downloading mypy_extensions-0.4.3-py2.py3-none-any.whl (4.5 kB)
88Collecting typing-extensions>=3.10
89 Downloading typing_extensions-4.4.0-py3-none-any.whl (26 kB)
90Collecting dill>=0.2
91 Downloading dill-0.3.6-py3-none-any.whl (110 kB)
92 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 110.5/110.5 kB 38.2 MB/s eta 0:00:00
93Collecting isort<6,>=4.2.5
94 Downloading isort-5.11.3-py3-none-any.whl (117 kB)
95 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 117.5/117.5 kB 37.5 MB/s eta 0:00:00
96Collecting tomlkit>=0.10.1
97 Downloading tomlkit-0.11.6-py3-none-any.whl (35 kB)
98Collecting platformdirs>=2.2.0
99 Downloading platformdirs-2.6.0-py3-none-any.whl (14 kB)
100Collecting astroid<=2.14.0-dev0,>=2.12.13
101 Downloading astroid-2.12.13-py3-none-any.whl (264 kB)
102 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 264.8/264.8 kB 60.1 MB/s eta 0:00:00
103Collecting lazy-object-proxy>=1.4.0
104 Downloading lazy-object-proxy-1.8.0.tar.gz (41 kB)
105 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.9/41.9 kB 12.7 MB/s eta 0:00:00
106 Installing build dependencies: started
107 Installing build dependencies: finished with status 'done'
108 Getting requirements to build wheel: started
109 Getting requirements to build wheel: finished with status 'done'
110 Preparing metadata (pyproject.toml): started
111 Preparing metadata (pyproject.toml): finished with status 'done'
112Collecting wrapt<2,>=1.11
113 Downloading wrapt-1.14.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB)
114 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.9/77.9 kB 28.0 MB/s eta 0:00:00
115Collecting snowballstemmer
116 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
117 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 26.7 MB/s eta 0:00:00
118Building wheels for collected packages: lazy-object-proxy
119 Building wheel for lazy-object-proxy (pyproject.toml): started
120 Building wheel for lazy-object-proxy (pyproject.toml): finished with status 'done'
121 Created wheel for lazy-object-proxy: filename=lazy_object_proxy-1.8.0-cp310-cp310-linux_x86_64.whl size=11289 sha256=7061cf0c567a0b48367e2e483f898eaf2055e5f14bfa26cb3f60bd784f925007
122 Stored in directory: /root/.cache/pip/wheels/0f/87/53/4a8ff2034f38ce1f3f2d993f3d05dada6fc36fadc7792ad6b1
123Successfully built lazy-object-proxy
124Installing collected packages: snowballstemmer, mypy-extensions, iniconfig, wrapt, typing-extensions, tomlkit, tomli, pyflakes, pydocstyle, pycodestyle, pluggy, platformdirs, packaging, mccabe, lazy-object-proxy, isort, exceptiongroup, dill, coverage, attrs, pytest, mypy, flake8, astroid, pylint, flake8-docstrings
125Successfully installed astroid-2.12.13 attrs-22.2.0 coverage-7.0.0 dill-0.3.6 exceptiongroup-1.0.4 flake8-6.0.0 flake8-docstrings-1.6.0 iniconfig-1.1.1 isort-5.11.3 lazy-object-proxy-1.8.0 mccabe-0.7.0 mypy-0.991 mypy-extensions-0.4.3 packaging-22.0 platformdirs-2.6.0 pluggy-1.0.0 pycodestyle-2.10.0 pydocstyle-6.1.1 pyflakes-3.0.1 pylint-2.15.9 pytest-7.2.0 snowballstemmer-2.2.0 tomli-2.0.1 tomlkit-0.11.6 typing-extensions-4.4.0 wrapt-1.14.1
126WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
127$ pip install -e .
128Obtaining file:///builds/zavolan_group/tools/terminal-fragment-selector
129 Preparing metadata (setup.py): started
130 Preparing metadata (setup.py): finished with status 'done'
131Collecting argparse
132 Using cached argparse-1.4.0-py2.py3-none-any.whl (23 kB)
133Requirement already satisfied: biopython in /usr/local/lib/python3.10/site-packages (from terminal-fragment-selector==0.1.1) (1.80)
134Requirement already satisfied: numpy>=1.23.3 in /usr/local/lib/python3.10/site-packages (from terminal-fragment-selector==0.1.1) (1.24.0)
135Requirement already satisfied: pandas>=1.4.4 in /usr/local/lib/python3.10/site-packages (from terminal-fragment-selector==0.1.1) (1.5.2)
136Requirement already satisfied: python-dateutil>=2.8.1 in /usr/local/lib/python3.10/site-packages (from pandas>=1.4.4->terminal-fragment-selector==0.1.1) (2.8.2)
137Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.10/site-packages (from pandas>=1.4.4->terminal-fragment-selector==0.1.1) (2022.7)
138Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas>=1.4.4->terminal-fragment-selector==0.1.1) (1.16.0)
139Installing collected packages: argparse, terminal-fragment-selector
140 Running setup.py develop for terminal-fragment-selector
141Successfully installed argparse-1.4.0 terminal-fragment-selector-0.1.1
142WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
143 Cleaning up project directory and file based variables 00:01
144Job succeeded