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README.md 507 B

Transcript Sampler

This workflow takes as input:

  • genome annotation gtf file
  • expression levels of each gene
  • csv file with transcript IDs and expression levels

The output is a trancript sample gtf file and csv file containing transcript IDs and counts.

The workflow can be run via the command line as

python scripts/exe.py --annotation {gtf input file} --output_csv {output csv file} --transcript_number {number of transcripts} --output_gtf {output gtf file} --input_csv {input csv file}