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Commit 70857a6c authored by Jakob Rien's avatar Jakob Rien
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Replace transcript_extractor.py

parent 7373e5e3
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......@@ -274,7 +274,7 @@ def _transcript_extractor (file_name,source_pathway_name,deposit_pathway_name):
def extract_transcript(file_name = "test",source_pathway_name = os.getcwd(),deposit_pathway_name = False,Input_free = False):
"""This it the overall exetutable funtion that will execute the transcript extraction process for a given file with all checks.
""" This it the overall exetutable funtion that will execute the transcript extraction process for a given file with all checks.
Expected input:
file_name: str ; default = test #the name of the gft file you want to look at
source_pathway_name: str ; default = current work directory #path of the gtf file
......@@ -282,7 +282,9 @@ def extract_transcript(file_name = "test",source_pathway_name = os.getcwd(),depo
Outputs:
file_name: str
source_pathway_name: str
deposit_pathway_name: str """
deposit_pathway_name: str
"""
if deposit_pathway_name == False:
deposit_pathway_name = source_pathway_name
......
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