Update README.md

README.md

@@ -9,4 +9,4 @@ This workflow takes as input:
  
  The workflow can be run via the command line as
  
- python scripts/exe.py --annotation {gtf input file} --output_csv {output csv file} --transcript_number {number of transcripts} --output_gtf {output gtf file} --input_csv {input csv file}
+ python scripts/new-exe.py --annotation {gtf input file} --output_csv {output csv file} --transcript_number {number of transcripts} --output_gtf {output gtf file} --input_csv {input csv file}