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refactor: major revision of script
This MR contains the rewritten Transcript sampler, modules were modified and streamlined, obsolete scripts were deleted.
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- .gitignore 2 additions, 0 deletions.gitignore
- README.md 4 additions, 6 deletionsREADME.md
- images/Transcript_sampling__architecture.png 0 additions, 0 deletionsimages/Transcript_sampling__architecture.png
- input_files/test.gtf 183 additions, 183 deletionsinput_files/test.gtf
- scripts/exon_length_filter.py 201 additions, 0 deletionsscripts/exon_length_filter.py
- scripts/find_representative_transcripts.py 0 additions, 246 deletionsscripts/find_representative_transcripts.py
- scripts/match_reprtranscript_expressionlevel.py 0 additions, 182 deletionsscripts/match_reprtranscript_expressionlevel.py
- scripts/new_exe.py 0 additions, 57 deletionsscripts/new_exe.py
- scripts/new_gtf_writer.py 0 additions, 20 deletionsscripts/new_gtf_writer.py
- scripts/poisson_sampling.py 0 additions, 57 deletionsscripts/poisson_sampling.py
- scripts/representative.py 46 additions, 46 deletionsscripts/representative.py
- scripts/transcript_extractor.py 329 additions, 0 deletionsscripts/transcript_extractor.py
- test/Test_representative_and_match/test_match.py 0 additions, 207 deletionstest/Test_representative_and_match/test_match.py
- tests/__init__.py 0 additions, 0 deletionstests/__init__.py
- tests/inputs/.gitkeep 0 additions, 0 deletionstests/inputs/.gitkeep
- tests/inputs/test_dict_repr_trans.txt 0 additions, 0 deletionstests/inputs/test_dict_repr_trans.txt
- tests/inputs/test_gencode.vM31.annotation_intermediat_file.txt 0 additions, 0 deletions.../inputs/test_gencode.vM31.annotation_intermediat_file.txt
- tests/inputs/test_gene_exprL 0 additions, 0 deletionstests/inputs/test_gene_exprL
- tests/inputs/test_gene_exprL_csv.csv 0 additions, 0 deletionstests/inputs/test_gene_exprL_csv.csv
- tests/inputs/test_ref_output.tsv 0 additions, 0 deletionstests/inputs/test_ref_output.tsv
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