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Transcript sequence extractor
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zavolan_group
tools
Transcript sequence extractor
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!45
renaming to conform to PEP
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Merged
renaming to conform to PEP
addition
into
master
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Merged
renaming to conform to PEP
Samuel Mondal
requested to merge
addition
into
master
Nov 28, 2022
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8512a692
1 commit,
Nov 28, 2022
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sequence_extractor/cli.py
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@@ -21,7 +21,7 @@ def main():
@@ -21,7 +21,7 @@ def main():
LOG
.
info
(
"
sequence_extractor begins
"
)
LOG
.
info
(
"
sequence_extractor begins
"
)
exon_extraction_from_gtf
()
exon_extraction_from_gtf
()
fasta_list
=
exon_concatenation
(
args
.)
fasta_list
=
exon_concatenation
(
args
.)
final_list
=
poly
A
_addition_to_fasta_list
(
fasta_list
)
final_list
=
poly
_a
_addition_to_fasta_list
(
fasta_list
)
list_to_file
(
final_list
,
args
.
output_file_name
)
list_to_file
(
final_list
,
args
.
output_file_name
)
LOG
.
info
(
"
sequence_extractor ends
"
)
LOG
.
info
(
"
sequence_extractor ends
"
)
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