Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
T
Transcript sequence extractor
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package registry
Container registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
GitLab community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
zavolan_group
tools
Transcript sequence extractor
Merge requests
!47
updated ReadMe file
Code
Review changes
Check out branch
Download
Patches
Plain diff
Expand sidebar
Merged
updated ReadMe file
README.md
into
master
Overview
0
Commits
1
Pipelines
0
Changes
1
Merged
updated ReadMe file
Ahmed Hassan Hussein Hefny Mahmoud
requested to merge
README.md
into
master
Dec 4, 2022
Overview
0
Commits
1
Pipelines
0
Changes
1
0
0
Merge request reports
Compare
master
master (base)
and
latest version
latest version
bf19db72
1 commit,
Dec 4, 2022
1 file
+
14
−
2
Inline
Compare changes
Side-by-side
Inline
Show whitespace changes
Show one file at a time
README.md
+
14
−
2
View file @ bf19db72
Edit in single-file editor
Open in Web IDE
Show full file
@@ -38,12 +38,24 @@ c. It needs to take into account the probability (weight/relative frequency) of
d. Append via e.g. str.join(), str.ljust()
e. Output the final transcript sequences as a .fasta file. (Final Output)
## Usage/Examples
```
python script
## Installation
TBA
## Usage/Examples
```
python script
'transcript_sequence_extractor'
'--input_fasta_file'
'genome fasta file'
'--input_gtf'
'gtf file'
'--output_file_name'
'output fasta file'
```
## License
Loading