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Merged Samuel Mondal requested to merge new into master
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"""This script defines a BED from exon annotation in a GTF, to get exon coordinates for use in bedtools. It also ensures that the concatenation happens in the correct order, regardless of the strandedness of the transcript.
Args:
GTF file
Args:
GTF file
Returns:
BED file with the format: chr, start, end, transcript_id, score, strand, gene_id
Returns:
BED file with the format: chr, start, end, transcript_id, score, strand, gene_id
"""
import argparse
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