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Created with Raphaël 2.2.019Sep1314Dec13128428Nov2726251815141291refactor: update setup.py, delete filesmastermasterfeat: clean code, combine scripts, add testsminor changeminor changeminor changes 2minor changesAdd actual tests to the test fileyml file editdockerfile additionchanges made by blackminor changes based on pylinterror correctionmade a directory for pre-bedtools scriptminor changes to directory structurereducing the scope of cli.py to work only after bedtoolsfinal changes to srtup.pyupdated gitignore (inspired by other groups)bedtool addition to environment fileversion additionversion additionrequirements txt additionedits to pre_bedtoolsPrebedtools script to sort exons per strand typeReplacing placeholder probability valuesupdated README fileupdated ReadMe filetest file created for exon concatenator functionrenaming to conform to PEPrenaming modulefunction name changecorrectionsrequirements_dev.txtupdated docstringsChanging to a list of tuples (much more simplified)Changing output from a list to a list of tuplesRemoval of old function from scriptNew function that reads fasta file one line at a time rather than loading the whole fileUpdate cli (still not complete)Added a new function for proper polyA additionworking code