update setup, ci

.gitlab-ci.yml

@@ -13,9 +13,8 @@ build-job:       # First stage deployment and installation of dependencies.
     - pip install -r requirements.txt
     - pip install -r requirements_dev.txt
     - pip install -e .
-    - echo "Dependencies successfully deployed."
 
-Coverage-test-job:   # Test Stage
+unit-test-job:   # Test Stage
   stage: test        # Starts when the above build stages finishes installing dependencies.
   script:
     - pip install -r requirements.txt
@@ -23,9 +22,8 @@ Coverage-test-job:   # Test Stage
     - pip install -e .
     - coverage run --source tsg -m pytest
     - coverage report -m
-    - echo "Coverage successfully deployed."
 
-Flake8/Pylint/mypy-test-job:   # Test Stage
+lint-test-job:   # Test Stage
   stage: test    # Deploys and runs all 3 linters.
   script:
     - pip install -r requirements.txt
@@ -34,4 +32,3 @@ Flake8/Pylint/mypy-test-job:   # Test Stage
     - flake8 --docstring-convention google tsg/ tests/
     - pylint tsg/ tests/
     - mypy tsg/ tests/
-    - echo "Linters successfully deployed."

setup.py

 """Set up project."""
 from pathlib import Path
-from setuptools import setup, find_packages
+from setuptools import setup, find_packages  # type: ignore
 
 project_root_dir = Path(__file__).parent.resolve()
 with open(project_root_dir / "requirements.txt",
@@ -16,7 +16,7 @@ setup(
     url=URL,
     license='MIT',
     author='Larissa Glass, Michael Zimmermann, Andri Fraenkl',
-    author_email='mate.balajti@unibas.ch',
+    author_email='michael.zimmermann@unibas.ch',
     description='Transcript structure generator',
     packages=find_packages(),
     install_requires=INSTALL_REQUIRES,

tests/__init__.py

-"""Tests for the package tsg."""
+"""Initialise tests."""

tsg/main.py

@@ -308,6 +308,7 @@ class Gtf:
 class TranscriptGenerator:
     """Class to sample a transcript."""
 
+    # pylint: disable=W0613
     def __new__(
         cls,
         transcript_id: str,