Skip to content
Snippets Groups Projects

Update README.md

Merged Update README.md
andri.fraenkl-main-patch-33685 into main
Merged Andri Fränkl requested to merge andri.fraenkl-main-patch-33685 into main
Compare
and
1 file
+ 1
− 1
Compare changes
  • Side-by-side
  • Inline
README.md
+ 1
− 1
@@ -39,7 +39,7 @@ To generate the sampled transcripts, open a new shell, activate your environment
```
conda activate transcript-structure-generator
transcript-generator --prob_inclusion <probability_inclusion> [--log "INFO"] <transcripts_file> <annotations_file>
transcript-generator --prob-inclusion <probability_inclusion> [--log "INFO"] <transcripts_file> <annotations_file>
```
where the transcripts file should be csv-formatted, the annotation file gtf-formatted and the inclusion probability for introns a float in the range [0,1]. The log parameter is optional and can be one of `["CRITICAL", "ERROR", "WARNING", "INFO", "DEBUG"]`. The default is `INFO`.