first version of PAQR part_two pipeline

PAQR/README.md

PAQR/config.yaml

PAQR/part_one.Snakefile

PAQR/part_two.Snakefile

PAQR/scripts/boxplots-TIN-distributions.R

PAQR/scripts/calculate-TIN-values.py

PAQR/scripts/calculate-average-3pUTR-length.py

PAQR/scripts/deNovo-used-sites-and-usage-inference.py

PAQR/scripts/mRNAseq-coverage-objects-and-wiggleFiles.py

PAQR/scripts/merge-TIN-tables.py

PAQR/scripts/plot-ecdfs.R

PAQR/scripts/relative-pas-position-within-exon.py

README.md

requirements_py3.txt