Initial commit

RESOURCES/tandem_polyAsites.bed

RESOURCES/transcripts_of_tandemPAS_exons.bed

SCRIPTS/KAPAC.R

SCRIPTS/boxplots-TIN-distributions.R

SCRIPTS/calculate-TIN-values.py

SCRIPTS/calculate-average-3pUTR-length.py

SCRIPTS/collapse_top_kmers_from_different_regions.R

...-used-sites-and-usage-inference.single_distal_included.py

SCRIPTS/filter-tandem-PAS-by-length.pl

SCRIPTS/mRNAseq-coverage-objects-and-wiggleFiles.py

SCRIPTS/mb-extract-sequences.py

SCRIPTS/mb-sitecount-matrix-kmers.py

SCRIPTS/merge-TIN-tables.py

SCRIPTS/plot-ecdfs.R

SCRIPTS/plot_kmers_of_all_regions.R

SCRIPTS/relative-pas-position-within-exon.py

Snakefile

config.yaml

samples.tsv

yaml_files/htseq_python2.yaml