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Commit 2c4b7b6e authored by Menardo Fabrizio's avatar Menardo Fabrizio
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citation

parent 3b1afd43
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......@@ -20,7 +20,8 @@
# You have to install ete3 http://etetoolkit.org/
# and joblib https://pythonhosted.org/joblib/ to run Treemmer
# If you use Treemmer for your research, please cite:
# Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity. Menardo et. al (2018), BMC Bioinformatics (in press).
from collections import defaultdict
from joblib import Parallel, delayed
......@@ -418,7 +419,8 @@ if (arguments.list_meta):
if (arguments.list_meta_count):
dict_meta_count = read_list_tags(arguments.list_meta_count)
if arguments.verbose > 0: # print progress on standard output
if arguments.verbose > 0:
# print progress on standard output
print "N of taxa in tree is : "+ str(len(t))
if arguments.solve_polytomies:
......@@ -586,5 +588,6 @@ if ((stop == 0) or (arguments.plot_always)): # create file for plot
if not arguments.no_plot:
make_plot()
if (arguments.verbose > 0):
print "\n If you use Treemmer for your research, please cite:\n\n \"Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity\" Menardo et. al (2018), BMC Bioinformatics (in press)\n\n"
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