# and joblib https://pythonhosted.org/joblib/ to run Treemmer
# If you use Treemmer for your research, please cite:
# Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity. Menardo et. al (2018),BMC Bioinformatics (in press).
# Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity. Menardo et. al (2018),BMC Bioinformatics 19:164. https://doi.org/10.1186/s12859-018-2164-8
fromcollectionsimportdefaultdict
fromjoblibimportParallel,delayed
...
...
@@ -589,5 +589,5 @@ if ((stop == 0) or (arguments.plot_always)): # create file for plot
make_plot()
if (arguments.verbose>0):
print"\n If you use Treemmer for your research, please cite:\n\n\"Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity\" Menardo et. al (2018), BMC Bioinformatics (in press)\n\n"
print"\n If you use Treemmer for your research, please cite:\n\n\"Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity\" Menardo et. al., BMC Bioinformatics (2018) 19:164\n\n"