Explore projects

User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline

General purpose Snakemake RNA-seq analysis workflow

Material and data for the workshop in South Africa (2018)

Data integration and annotation workflows

Python tool to reduce size and redundancy of phylogenetic datasets

TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

Riboseq Pipeline

QMEAN - Qualitative Model Energy ANalysis

ModelArchive Python package... functionality to do all kinds of things with ModelArchive and ModelCIF.

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

🐍 ☕ 🔩 🔧 A collection of commonly used Python helper functions.