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Commit 352cb1c9 authored by Kai Schleicher's avatar Kai Schleicher
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Add missing spot diameter parameter to function

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2d_spots_in_fibers.py
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...@@ -494,7 +494,7 @@ for index, channel in enumerate(processing_channels): ...@@ -494,7 +494,7 @@ for index, channel in enumerate(processing_channels):
channel = int(channel) channel = int(channel)
quality_threshold = float(quality_thresholds[index]) quality_threshold = float(quality_thresholds[index])
spots_channel = BFopen_image(path_to_image, channel, series_number) spots_channel = BFopen_image(path_to_image, channel, series_number)
spots_label_imp = run_trackmate_dog_spot_detector(spots_channel, quality_threshold) spots_label_imp = run_trackmate_dog_spot_detector(spots_channel, spot_diameter, quality_threshold)
save_image_as_IJtif(spots_label_imp, filename, "spots_ch" + str(channel), parent_dir) save_image_as_IJtif(spots_label_imp, filename, "spots_ch" + str(channel), parent_dir)
save_labelimage_as_ijroiset(spots_label_imp, filename, "spots_ch" + str(channel), parent_dir) save_labelimage_as_ijroiset(spots_label_imp, filename, "spots_ch" + str(channel), parent_dir)
spots_binary_imp = convert_labelimage_to_binary(spots_label_imp) spots_binary_imp = convert_labelimage_to_binary(spots_label_imp)
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