more robust file naming and path handling
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- 1_identify_fibers.py 15 additions, 13 deletions1_identify_fibers.py
- 2a_identify_MHC_positive_fibers.py 9 additions, 8 deletions2a_identify_MHC_positive_fibers.py
- 2b_central_nuclei_counter.py 10 additions, 10 deletions2b_central_nuclei_counter.py
- 2c_fibertyping.py 13 additions, 16 deletions2c_fibertyping.py
- 3_manual_rerun.py 7 additions, 7 deletions3_manual_rerun.py
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